Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00407 ATGGCATCTATTCTTCAAGCTCGTAGCTTCATGTTGTTGATTGCTTATGCAATGATGTTCACTTTGATGGGAGAACAAACAGTAGCTGTGGCGATATTTAGACCCAGTAAATGGTCTCTTGCTCATGCCACCTTTTATGGAGATGAAACTGCTTCTGAAACCATGGGAGGAGCATGTGGATATGGAAATTTGTTTCAGAATGGTTACGGGACAGATACAGTGGCTTTAAGCTCGACGTTGTTCAACAATGGTTATGCATGCGGGACATGTTTCCAGATTAAATGCTACCAATCAAGTGCATGTTATAGAAATGTGGCCTTCACCACTGTCACTGCCACCAATCTTTGCCCTCCTAATTGGTCCAAACCCTCTGATAATGGTGGATGGTGTAACCCACCTCGAGTTCATTTTGACATGGCCAAGCCTGCTTTCATGAAAATTGCACAGTGGAAAGCTGGTATCGTCCCTGTTATGTACCGCAGGGTACCATGCCAAAGAAAGGGAGGAATTCGATTCTCTTTCCAAGGAAACGGATACTGGCTATTGGTGTACGTGATGAACGTCGGAGGTGGAGGAGATATGTCGAGCATGATGGTGAAAGGAAGCAGAACAGGATGGATTAAGATGAGCCATAACTGGGGTGCTTCCTACCAAGCATTTGCAACACTAGGTGGTCAAGCTCTTTCTTTCAGGCTGACTTCATACACCACCAAGGAGACTATTATTGCATGGAATGTAGCTCCTTCCAATTGGAATGTTGGACTCACTTATTCCAGTAGGGTCAACTTCCATTGA 795 0.4465 MASILQARSFMLLIAYAMMFTLMGEQTVAVAIFRPSKWSLAHATFYGDETASETMGGACGYGNLFQNGYGTDTVALSSTLFNNGYACGTCFQIKCYQSSACYRNVAFTTVTATNLCPPNWSKPSDNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVMYRRVPCQRKGGIRFSFQGNGYWLLVYVMNVGGGGDMSSMMVKGSRTGWIKMSHNWGASYQAFATLGGQALSFRLTSYTTKETIIAWNVAPSNWNVGLTYSSRVNFH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00407 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Mepo5g00407 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Mepo5g00407 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Mepo5g00407 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Mepo5g00407 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Mepo5g00407 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Mepo5g00407 264 Gene3D - 169 264 IPR036749 -
Mepo5g00407 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Mepo5g00407 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Mepo5g00407 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Mepo5g00407 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Mepo5g00407 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Mepo5g00407 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Mepo5g00407 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Mepo5g00407 264 CDD DPBB_EXPA_N 38 164 - -
Mepo5g00407 264 Pfam Expansin C-terminal domain 170 248 IPR007117 -
Mepo5g00407 264 SUPERFAMILY Barwin-like endoglucanases 28 187 IPR036908 -
Mepo5g00407 264 SUPERFAMILY PHL pollen allergen 166 259 IPR036749 -
Mepo5g00407 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Mepo5g00407 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Mepo5g00407 264 Gene3D - 25 165 IPR036908 -
Mepo5g00407 264 SMART dpbb_1 73 159 IPR007112 -
Mepo5g00407 264 PANTHER EXPANSIN-A15 15 259 IPR002963 GO:0009664
Mepo5g00407 264 Pfam Lytic transglycolase 73 159 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00407 Mepo-Chr5 3620856 3622032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00407 18 264 Expansin Gene Family AT1G12560 68.826 4.80e-128 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00407 - - gmx:100807807 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00407 5 3620856 3622032 Mepo5g00407 5 3620856 3622032 ECH
Mepo1g01532 1 15086989 15088949 Mepo5g00407 5 3620856 3622032 PCT