Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00401 ATGCAAGAACCAAGCTTAGGGATGATGCAGGGGGGTGGTGGTGGTTGTTACGGCGGAGATGGTGGTGGTGAGAATAGACAACTGAAGGCGGAGATAGCAACACATCCTTTGTATGAACAGCTTCTGTCTGCACATGTAGCATGTCTTCGAGTTGCTACTCCTATTGATCAGTTACCATTGATTGATGCTCAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCTCCTCATGATCGTCAACAACTCGACAACTTCCTCGCACAATATTTGATAGTTTTGTGTACATTCAAAGAACAACTTCAGCAACATGTCAGAGTTCATGCTGTTGAAGCTGTTATGGCTTGCCGTGATATTGAAAACACCTTACAAGCCCTCACAGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACAATGTCGGATGATGAAGATGAACAATTGCAGATGGATTATGGTTTAGATAATCAATCAAGTGGTGGTGGTGATCATGACATGATGGGACTTGGTCCATTACTTCCTACTGAATCTGAAAGGTCACTCATGGAAAGAGTTCGTCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCAAGAATTGAAGATGTAAGGGAGGAAATATTAAGGAAAAGAAGAGCTGGGAAATTACCCGGTGACACAACTTCAGTCTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAAGCAAAACTTGTGGAGGAGACAGGATTGCAGCTGAAGCAAATCAATAATTGGTTCATTAACCAAAGGAAAAGAAACTGGCACAGTAATTCTCAATCGGTCACCTCTTTGAAATCAAAACGCAAGAGAGTGTACTGTAGACCCTCCAGTGAGATGCACCAAGAGATATAA 918 0.4216 MQEPSLGMMQGGGGGCYGGDGGGENRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQLQMDYGLDNQSSGGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRVYCRPSSEMHQEI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00401 305 MobiDBLite consensus disorder prediction 1 20 - -
Mepo5g00401 305 SMART HOX_1 217 282 IPR001356 GO:0003677
Mepo5g00401 305 CDD homeodomain 218 279 IPR001356 GO:0003677
Mepo5g00401 305 ProSiteProfiles 'Homeobox' domain profile. 215 278 IPR001356 GO:0003677
Mepo5g00401 305 ProSiteProfiles ELK domain profile. 195 215 IPR005539 GO:0003677
Mepo5g00401 305 SUPERFAMILY Homeodomain-like 217 282 IPR009057 -
Mepo5g00401 305 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Mepo5g00401 305 Pfam Homeobox KN domain 235 274 IPR008422 GO:0003677|GO:0006355
Mepo5g00401 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 280 - -
Mepo5g00401 305 FunFam homeobox protein knotted-1-like 3 isoform X1 216 277 - -
Mepo5g00401 305 Gene3D - 214 290 - -
Mepo5g00401 305 Pfam KNOX2 domain 84 135 IPR005541 GO:0003677|GO:0005634
Mepo5g00401 305 Pfam KNOX1 domain 28 69 IPR005540 GO:0003677|GO:0005634
Mepo5g00401 305 SMART KNOX2_2 81 136 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00401 Mepo-Chr5 3564557 3569148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00401 1 291 Homeobox Transcription Factor Family AT1G62990 78.451 1.10e-168 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mepo5g00401 KNOX2 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00401 - - tpra:123907403 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00401 5 3564557 3569148 Mepo5g00401 5 3564557 3569148 ECH