Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00391 ATGGATTTCTTCATGTCATCATTTAGTGATTACTCAGACACTTCTTCATCTGAAACAACTTCAACAAACCGTACAAGTTCCTCAGAAGTGATTTTGGCATCAACTGAGCCAAAGAAGAGAGCAGGGAGAAGAGTGTTCAAGGAGACAAGACATCCTGTGTATCGAGGAGTGCGAAGAAGGAACAATAACAAGTGGGTTTGTGAGATGAGAGTTCCTAACATTAACGTTAACAAAAACAATAAGTCAAGGATTTGGCTTGGAACATATCCAACTCCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTGCTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCTGACTCGGCATGGCGGTTGACGTTGCCGGTGTCTAATGATGCGGTGGTGATAAGGAGGGCGGCCATGGAGGCTGCACATTTGTTTGCAGCTGAGGACAAGCATGATACCGTTGAAGAAAAAGTTCCGGCGGTTTCTTCGGAATTTGAAGACATGCATGATTTGCTTTTGAGTATTGCGAATGAGCCTTTACGTTCAGCTCCTCCTTCCCCAACAAATTATGGTAGTTATAACTGGGGTGACATAGAGATATTTGATACTCAGGTTTCACTATGGAGCTTTTCTATTTGA 636 0.4292 MDFFMSSFSDYSDTSSSETTSTNRTSSSEVILASTEPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALALKGKSACLNFADSAWRLTLPVSNDAVVIRRAAMEAAHLFAAEDKHDTVEEKVPAVSSEFEDMHDLLLSIANEPLRSAPPSPTNYGSYNWGDIEIFDTQVSLWSFSI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00391 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 208 IPR045277 GO:0003700
Mepo5g00391 211 SMART rav1_2 53 122 IPR001471 GO:0003700|GO:0006355
Mepo5g00391 211 MobiDBLite consensus disorder prediction 1 33 - -
Mepo5g00391 211 MobiDBLite consensus disorder prediction 1 38 - -
Mepo5g00391 211 CDD AP2 54 118 IPR001471 GO:0003700|GO:0006355
Mepo5g00391 211 Gene3D AP2/ERF domain 53 117 IPR036955 GO:0003700|GO:0006355
Mepo5g00391 211 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Mepo5g00391 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Mepo5g00391 211 SUPERFAMILY DNA-binding domain 53 118 IPR016177 GO:0003677
Mepo5g00391 211 ProSiteProfiles AP2/ERF domain profile. 53 116 IPR001471 GO:0003700|GO:0006355
Mepo5g00391 211 Pfam AP2 domain 52 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00391 Mepo-Chr5 3449443 3450325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00391 29 209 AP2-EREBP Transcription Factor Family AT1G63030 49.730 7.99e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mepo5g00391 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00391 - K09286 psat:127120702 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00391 5 3449443 3450325 Mepo5g00391 5 3449443 3450325 ECH
Mepo1g01522 1 15000111 15001474 Mepo5g00391 5 3449443 3450325 PCT