Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00390 ATGAATATTTTCCTTTCATCTTTTGGCGACTACTCAGATTCTTCTTCTTCTTCTTCAGAAACAAGTTCATCAAACCGTACAAGTTCTTCAGAAGTGATTTTGGCATCTGCAAGACCAAAGAAGAGAGCAGGAAGAAGAGTGTTCAAGGAGACAAGACATCCGGTGTATCGAGGAGTGCGAAGAAGGAACAATAACAAGTGGGTTTGTGAGATGAGAGTTCCTAACAATAACGTTAACAAAAACAATAAGTCAAGGATTTGGCTTGGAACATATCCAACTCCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTGCTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCTGACTCTGCATGGCGGTTGAGGTTGCCGGAGTCGAATGATGCGGTGGAGATAAGGAGAGCGGCGATGGAGGCAGCTCAGTTGTTTGCGGTTGAAGACAAGCAATGTTGTGTTACCGTTGAAGATGGAGTATTTATGGACATGGAAGATTCTAAGAATGTGCTAGAAGCACAGGTTCCGGTGGTGTCATCAGAATTTCAAGACATGCATGATTTGCTTTTGAGTATTGCTAATGAGCCTTTACGTTCTCATCCTCCTTCCCCTACAAATTATTATGGTAGTAATAACTATGATGACATGGAGATATTTGACACTACTCAGATAGTTTCATTGTGGAACTTCTCAATTTGA 702 0.4145 MNIFLSSFGDYSDSSSSSSETSSSNRTSSSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNVNKNNKSRIWLGTYPTPEMAARAHDVAALALKGKSACLNFADSAWRLRLPESNDAVEIRRAAMEAAQLFAVEDKQCCVTVEDGVFMDMEDSKNVLEAQVPVVSSEFQDMHDLLLSIANEPLRSHPPSPTNYYGSNNYDDMEIFDTTQIVSLWNFSI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00390 233 SMART rav1_2 55 124 IPR001471 GO:0003700|GO:0006355
Mepo5g00390 233 Pfam AP2 domain 54 110 IPR001471 GO:0003700|GO:0006355
Mepo5g00390 233 ProSiteProfiles AP2/ERF domain profile. 55 118 IPR001471 GO:0003700|GO:0006355
Mepo5g00390 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 230 IPR045277 GO:0003700
Mepo5g00390 233 SUPERFAMILY DNA-binding domain 55 120 IPR016177 GO:0003677
Mepo5g00390 233 CDD AP2 56 120 IPR001471 GO:0003700|GO:0006355
Mepo5g00390 233 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Mepo5g00390 233 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Mepo5g00390 233 MobiDBLite consensus disorder prediction 1 45 - -
Mepo5g00390 233 Gene3D AP2/ERF domain 55 119 IPR036955 GO:0003700|GO:0006355
Mepo5g00390 233 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00390 Mepo-Chr5 3443375 3444390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00390 31 231 AP2-EREBP Transcription Factor Family AT1G12610 48.624 6.26e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo5g00390 AP2 3.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00390 - - psat:127120702 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00390 5 3443375 3444390 Mepo5g00390 5 3443375 3444390 ECH
Mepo1g01520 1 14975479 14976538 Mepo5g00390 5 3443375 3444390 PCT