Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00389 ATGGATTTTTTCATGTCATCTTTTGGTGAGTACTCAGACACTTCTTCTTTGGAAACAACTTCATCAAACCGTACAAGTTCCTCGGAAGTGGTTTTGGCATCAGTTAAGCCAAAGAAGAGAACAGGGAGAAGAGTGTTTAAGGAGACAAGACATCCTATGTATCGAGGAGTACGAAGAAGGAACAACAACAAGTGGGTTTGTGAGATGAGAGTTCCTAACAATAACGTTAACAAAAACAATAAGTCAAGGATTTGGCTTGGAACGTATCCAAATCCTGAAATGGCTGCACGTGCACATGACGTTGCTGCACTTGCTCTTAAGGGGAAATCAGCTTGTCTCAATTTTGCTGACTCGGCATGGCGGTTGACGTCGCCGGAGTCAAATGATGCGGTGGTGATAAGGAGGGCGGCCATGGAGGCTGCTCAGTTGATTGCGGTTGAGGACAAGAAGGATAGCATCTTCATTGAGGAACAAGCTCCGGCGGTGCCGTCGGAATTTGAAGGCATGCATGATTTGCTTCTAAGAATTTCCAATGAGCCTTTACGTTCAGCTCCTCCTTCCCCAACAAACTACGGTAGTAACTGCTGGGGTGACATGGAGATATTTGACACTCAATTAGTTTCACTTTGGAACTTCTCTATTTAA 645 0.4465 MDFFMSSFGEYSDTSSLETTSSNRTSSSEVVLASVKPKKRTGRRVFKETRHPMYRGVRRRNNNKWVCEMRVPNNNVNKNNKSRIWLGTYPNPEMAARAHDVAALALKGKSACLNFADSAWRLTSPESNDAVVIRRAAMEAAQLIAVEDKKDSIFIEEQAPAVPSEFEGMHDLLLRISNEPLRSAPPSPTNYGSNCWGDMEIFDTQLVSLWNFSI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00389 214 CDD AP2 54 118 IPR001471 GO:0003700|GO:0006355
Mepo5g00389 214 MobiDBLite consensus disorder prediction 1 29 - -
Mepo5g00389 214 SUPERFAMILY DNA-binding domain 53 118 IPR016177 GO:0003677
Mepo5g00389 214 ProSiteProfiles AP2/ERF domain profile. 53 116 IPR001471 GO:0003700|GO:0006355
Mepo5g00389 214 Pfam AP2 domain 53 108 IPR001471 GO:0003700|GO:0006355
Mepo5g00389 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 211 IPR045277 GO:0003700
Mepo5g00389 214 SMART rav1_2 53 122 IPR001471 GO:0003700|GO:0006355
Mepo5g00389 214 Gene3D AP2/ERF domain 53 117 IPR036955 GO:0003700|GO:0006355
Mepo5g00389 214 MobiDBLite consensus disorder prediction 8 29 - -
Mepo5g00389 214 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Mepo5g00389 214 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00389 Mepo-Chr5 3438929 3439931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00389 29 212 AP2-EREBP Transcription Factor Family AT1G63030 48.370 6.48e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo5g00389 AP2 9.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00389 - K09286 psat:127120702 248.054