Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00375 ATGTCGACACCGAACCGTTCCTCATCAGACATCATCGATTCAACCCCCTTTCTCGCCAATCCCGGCGGAGGTTCCTCCTCCGATGACCTCAACAACTCCGGTCGCCGTCGTCGCCAACGCCTCCTCCAAGCCGCACGCTTCCTCCGTCAAGCAAGCGGCCGTCGAACGATGCGGGAACCTTCCGTCGTCGTTCGAGAAGCTGCGGCGGAGCAATTAGAAGAACGACAAAGCGATTGGGCGTATTCGAAGCCGGTTGTGATTCTCGATATCGTTTGGAACTTCGCCTTCGTCATTGTGGCGGGAACCGCATTGTTTTTGAGCCGGAATGAAGCGCCGGAAATGCCGTTGAGGTTGTGGATTGTGGGATATGTGCTTCAATGTGTTCTTCATATGGTTTGTGTTTGTTTTGAGTATAGAAGAAGGAGAAGATTTCAACGTTCTTCGTCTTCGAATGCGGTTGCAGGTTCTGATAGGGTTGGTAGTGGGAATTTCAGTTCAAGGGAAGGTTCTCGTTCTGCTGTTTCTGGTTCCAGTTATGTTTCTTTGGCGCAATTTGATGAAGAGAGTACTAGTGTTGCAAAACATTTGGAATCAGCCAATACCATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTCTAGCCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTTCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTGGCCTGTGTCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTTTATGCTGTTGCAGACCAGGAAGGGGCATCAAAGGAAGACATTGAGCAGTTATCAAAATTTAAATTCCGAAAAGCTGAAAGTAATGAGAAACAAACTGATAACAATCAAGGTCCTGTTGGAGGAATAATGACCGAGTGTCGGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGAGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCCACATGCCCTCTCTGCAAGTATAACATCTTGAAAAGTAGTAACCTCGGTCAAGAGGAAGTGTAG 1164 0.4613 MSTPNRSSSDIIDSTPFLANPGGGSSSDDLNNSGRRRRQRLLQAARFLRQASGRRTMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVIVAGTALFLSRNEAPEMPLRLWIVGYVLQCVLHMVCVCFEYRRRRRFQRSSSSNAVAGSDRVGSGNFSSREGSRSAVSGSSYVSLAQFDEESTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAQDSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRKAESNEKQTDNNQGPVGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLGQEEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00375 387 MobiDBLite consensus disorder prediction 152 172 - -
Mepo5g00375 387 Pfam Ring finger domain 331 373 IPR001841 -
Mepo5g00375 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Mepo5g00375 387 SUPERFAMILY RING/U-box 322 379 - -
Mepo5g00375 387 MobiDBLite consensus disorder prediction 1 34 - -
Mepo5g00375 387 CDD RING-H2_RNF6-like 331 373 - -
Mepo5g00375 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 385 IPR013083 -
Mepo5g00375 387 PANTHER TARGET OF ERK KINASE MPK-1 52 378 - -
Mepo5g00375 387 MobiDBLite consensus disorder prediction 1 30 - -
Mepo5g00375 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Mepo5g00375 387 SMART ring_2 332 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00375 Mepo-Chr5 3289351 3296824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00375 20 380 C3H Transcription Factor Family AT1G68070 49.451 1.96e-120 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00375 - - gmx:100790497 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01511 1 14880171 14886994 Mepo5g00375 5 3289351 3296824 PCT