Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00372 ATGTTGGAAATGGAAAAGAAGCTGAAGGGTTTAGATTCACCAAATCATCGAGACTTGCTTCATTTATGTCTTTCTTCACCCAATTGCAATAGTGACACTTGTTTTCTGGAATCATCCCCTGCTACAGGGAAAATAAAATCGCAAATTAGCTCGAAAAATGGATTCTGGACAGAAGAAGAGGATAATCTTTTGATTGAGATAGTCAAGATGCACGACGGAAGCATCTGGAAAAGTATAGGTGGATGCGCTGCATACTTCCCTGGGCGAACAGACATCGAATGCTTCCATCGCTGGCAAAAAGTTTCAAATCATGATCTTGTAAAAAGATCATGGACAAAGGAGGAGGACGAGGCCTTGATTGAGCTAGTAAGAAAATATGGTTTCAAGAGATGGTCTTTTATAGCGAAATCCATGCCAGGTCGTATCGGAAAGCAATGTCGAGAGAGGTGGCATAATAACCTTGATCCTGCTATAAAAAAGGGTGCTTGGACGGAGGAGGAGGAGTCAATACTTGCTCACTACTACCAAATATATGGCAGTAAATGGTCAGAAATTGCAAGGGTTCTTCCTGGAAGGAGTGACAATGCTATAAAAAATCATTGGAACAGCTCAATGAAGAAGAAGTCATCGGCATCACCTACTAGGTGTGACATGGATGTTTCCACTTCCAGTTTCTGCTCTTCTCTAATAAAGCCAGCACATGATTCGGTTAAAGCTGAGGATCAAAGTTTAATTGGAATGGTTTCTCCCAAGCAACGTAACTGGCTGAATCACAATTCTGATAACTTCACAACTAGAATGGTTATTCCAAATGCTTCCGTAGAGGAATTTCGGTCTGATAAAAACATTTTTGGCGTGGCAACTCCTAGGGCCTCAGAAAAAAGTGAAAGAAGATTGGTCAATTTACCAAATGAGATGGAAACAGTTACATGCTTCAAAGACCATGCCAACCCTACCTTCGCAGATAAACACATGAACTCGTCGATGGATATGCATGCTACAAATATGGATTGTTTCCCTTCTTCCAGTACTGTTACTTACGAGGCCTATAATTCTCCCAAATGGCAAAAGGTTTCTTTTTCAGAATCAAAGTTTATTGCTGGTAATGAATCTGATAGTTCCTATTCGAACTACTTAAAATTGGCTAATCATGAGAAGAAAGTTCAAGTTGGAATGGAAAGCAATAACAAAAGCGACATGAGCCCAGAATCGGTACTAAGAAACTTAGCAATGACCTATGAGAACATTCCTTCTATTATAAGGAAAAGATCTACTAGGAAGTCATGCAGTGCTGCCAAATCTGGCAAGTCCCAAACACCTTCTAGAATGGTTATCTCAACTCCTGAAGCAGGATGTGTAATTGGTTTTGATAATTTAAAACTCAACCAAGGATTTGTTGTTCCATTCCTTCCTGGACATGCCATGGAATGA 1431 0.4011 MLEMEKKLKGLDSPNHRDLLHLCLSSPNCNSDTCFLESSPATGKIKSQISSKNGFWTEEEDNLLIEIVKMHDGSIWKSIGGCAAYFPGRTDIECFHRWQKVSNHDLVKRSWTKEEDEALIELVRKYGFKRWSFIAKSMPGRIGKQCRERWHNNLDPAIKKGAWTEEEESILAHYYQIYGSKWSEIARVLPGRSDNAIKNHWNSSMKKKSSASPTRCDMDVSTSSFCSSLIKPAHDSVKAEDQSLIGMVSPKQRNWLNHNSDNFTTRMVIPNASVEEFRSDKNIFGVATPRASEKSERRLVNLPNEMETVTCFKDHANPTFADKHMNSSMDMHATNMDCFPSSSTVTYEAYNSPKWQKVSFSESKFIAGNESDSSYSNYLKLANHEKKVQVGMESNNKSDMSPESVLRNLAMTYENIPSIIRKRSTRKSCSAAKSGKSQTPSRMVISTPEAGCVIGFDNLKLNQGFVVPFLPGHAME 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00372 476 Gene3D - 52 107 - -
Mepo5g00372 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 101 IPR017930 -
Mepo5g00372 476 FunFam Transcriptional activator Myb isoform A 107 160 - -
Mepo5g00372 476 SUPERFAMILY Homeodomain-like 49 107 IPR009057 -
Mepo5g00372 476 CDD SANT 56 101 IPR001005 -
Mepo5g00372 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 209 IPR017930 -
Mepo5g00372 476 Gene3D - 161 224 - -
Mepo5g00372 476 Gene3D - 108 159 - -
Mepo5g00372 476 CDD SANT 162 202 IPR001005 -
Mepo5g00372 476 ProSiteProfiles Myb-like domain profile. 103 154 IPR001005 -
Mepo5g00372 476 SMART sant 52 104 IPR001005 -
Mepo5g00372 476 SMART sant 107 156 IPR001005 -
Mepo5g00372 476 SMART sant 159 207 IPR001005 -
Mepo5g00372 476 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Mepo5g00372 476 Pfam Myb-like DNA-binding domain 160 202 IPR001005 -
Mepo5g00372 476 Pfam Myb-like DNA-binding domain 56 100 IPR001005 -
Mepo5g00372 476 SUPERFAMILY Homeodomain-like 105 201 IPR009057 -
Mepo5g00372 476 PANTHER MYB PROTEIN-RELATED 49 101 - -
Mepo5g00372 476 ProSiteProfiles Myb-like domain profile. 155 205 IPR001005 -
Mepo5g00372 476 CDD SANT 110 154 IPR001005 -
Mepo5g00372 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 158 IPR017930 -
Mepo5g00372 476 ProSiteProfiles Myb-like domain profile. 48 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00372 Mepo-Chr5 3273967 3277088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00372 54 208 MYB Transcription Factor Family AT5G02320 62.581 1.65e-65 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g00372 Myb_DNA-binding 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00372 - - psat:127120714 634.409