Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00348 ATGGATGAGAGAGAAGCTATGTCATTTTCTGATGGGTCTGGTTCATATTACATGCATAGAGAAAGAGTGTTTCAACAACCACCTCCTGGGTTTAGAGCTTTGTCTAATCCTCATGGTGGTTCTGATGGTTCTGCATTTTCAGCAGAGCATCAACATGGTAGTTTTAGTCATGGTGCTGTAGTGCCTTATTCAGGGGAGCAGTCTGTGAAAAAGAAAAGAGGGAGGCCTAGGAAATATGGTCCTGATGTACCTGTTTCTTTGAGACTTTCTCCTATGTCTGCTACTGCTAATTCCACTCCTGATTCGGAGAAACGGCCGAGAGGACGGCCACCGGGAAGTGGAAGGAAGCAACAGCTAGCTGCTCTAGGTGAGTGGATGAACAGTTCCGCTGGACAGGCTTTTTCACCTCATGTTATCACCATTGGAGCTCAAGAGGACATTGTAGCAAAGTTATTGTCATTTTCACAACATAGACCACGCGCTTTATGCATCTTGTCGGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACCAGTGTCAGTGTTACATATGAGGGTCGATTCCAAATATTATGCCTATCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCACAATAGAACTGGTGGCATTAGTGTTTCCCTTTCTAGTACGGATGGTCACGTTATCGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTAGTTTGCAGCTTTGTGTACGGTGGTTCCAAGCCAAAGTCAACAAAACAAGAAACTGTTGTAAAAGACGATGATGATTCTGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCAGGAAGTGAGCCACCTAATCAAAACTATACAGCTTCTGGAACAGGCACAATGTGGCATGAATCAAGGACAGTCGACTTGAAAAGTACACAACCACACACTGGTATTGATTTGATGAACGGGTGA 966 0.4555 MDEREAMSFSDGSGSYYMHRERVFQQPPPGFRALSNPHGGSDGSAFSAEHQHGSFSHGAVVPYSGEQSVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPPGSGRKQQLAALGEWMNSSAGQAFSPHVITIGAQEDIVAKLLSFSQHRPRALCILSGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEDGGPHNRTGGISVSLSSTDGHVIGGGVARLIAASPVQVVVCSFVYGGSKPKSTKQETVVKDDDDSEPQSSDKLASPGSEPPNQNYTASGTGTMWHESRTVDLKSTQPHTGIDLMNG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00348 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 286 IPR039605 GO:0003680
Mepo5g00348 321 MobiDBLite consensus disorder prediction 275 299 - -
Mepo5g00348 321 CDD DUF296 136 248 IPR005175 -
Mepo5g00348 321 ProSiteProfiles PPC domain profile profile. 131 270 IPR005175 -
Mepo5g00348 321 PRINTS AT-hook-like domain signature 102 113 IPR017956 GO:0003677
Mepo5g00348 321 PRINTS AT-hook-like domain signature 70 80 IPR017956 GO:0003677
Mepo5g00348 321 MobiDBLite consensus disorder prediction 1 118 - -
Mepo5g00348 321 MobiDBLite consensus disorder prediction 255 299 - -
Mepo5g00348 321 Gene3D - 136 265 - -
Mepo5g00348 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Mepo5g00348 321 MobiDBLite consensus disorder prediction 259 274 - -
Mepo5g00348 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00348 Mepo-Chr5 3054277 3057964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00348 1 321 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.556 3.37e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00348 - - tpra:123911083 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00348 5 3054277 3057964 Mepo2g04610 2 54473613 54477446 PCT