Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00336 ATGGGGTTCCCTACAGACGTTGTGTTACCAAAGGTGTTTGTGCAGATCCTTTCTATACTATCTTTCATCAAAAAACTCGTTACCATCTTCTTCTTTTATTCTGGTATAGATTCCGGCTTCGCCTTTCCGGAGAGTGTGCCTGAATTTCAATCAGTTAATCCCTTGCTGCTCATCAGAGAAACCCTGCCGGTGGTGAAGTTCTCGGAGCTGGAGCTGGCGGTGGAGAGCTGCGCCGTCTGCCTCTGTGAGTTCAAGGCGGAGGACGAGATCCAACGGCTCACAAACTGCCGCCATATCTTCCATAGAAGCTGCCTGGACCGTTGGATGGGATATGATCATACAACATGTCCTTTGTGTCGCACAACGTTCCTACCACATCACATGCAAGATGCATAA 396 0.4874 MGFPTDVVLPKVFVQILSILSFIKKLVTIFFFYSGIDSGFAFPESVPEFQSVNPLLLIRETLPVVKFSELELAVESCAVCLCEFKAEDEIQRLTNCRHIFHRSCLDRWMGYDHTTCPLCRTTFLPHHMQDA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00336 131 ProSiteProfiles Zinc finger RING-type profile. 77 120 IPR001841 -
Mepo5g00336 131 SUPERFAMILY RING/U-box 58 126 - -
Mepo5g00336 131 Pfam Ring finger domain 76 120 IPR001841 -
Mepo5g00336 131 SMART ringv_2 76 120 IPR011016 GO:0008270
Mepo5g00336 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 125 IPR013083 -
Mepo5g00336 131 PANTHER - 3 128 IPR044249 -
Mepo5g00336 131 SMART ring_2 77 119 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00336 Mepo-Chr5 2936938 2938003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00336 1 129 C3H Transcription Factor Family AT1G63840 46.479 4.21e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00336 K16281 - gmx:102665617 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00336 5 2936938 2938003 Mepo5g00336 5 2936938 2938003 ECH
Mepo5g00336 5 2936938 2938003 Mepo2g04655 2 54873839 54874678 PCT