Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00307 ATGACAACAAAGAAAAACACTCACCGCCTTAACCTTACAAAAGAAAACACTCCAAAACAACCATTTCCAAAAATAGTAAGAATAACCGTCACAGACAATGATGCTACAGATTATTCCAGCGATGAAGAAGAATCATCCACCACACGCTTCTTAGAACGCAACCGAGGTATAAAGTTTGTTGATGAGATTATCATAGAGCCATGTACTGTGAGCAAGAATAATAACAGTATCAATAACAGCGTTGTTTCGAGGAAAAGAAACAGAAACAGGACCACCGGAGTAAGAAAAACAAGAGCTCCGGTGAATATTCCGGCGAAGAAATACCGTGGAGTGAGGCAGAGACCATGGGGAAAATGGGCGGCGGAGATAAGAGACCCGGCGCGTGGAGTGCGCGTGTGGCTTGGTACATTTCAAACGGCTGAAGAAGCTGCTATTGTGTACGACAACGCGGCTATTAAGTTGCGTGGACCAGACGCGCTAACTAATTTCATAACTCCACCTGTAAGTGCCACTGCCACGTGTCCTTTATCACCACCACCACCACCACCGGAAAATGAAATTCCTCTTCCGTCATTACCGTTACCGGTAAACTCCGGTGAAGAATCTCAATCTCAAAACAATAATAATAAGAGTTTATTTTCTCCTACTTCAGTTCTTCAATGTTGTTCATCTTCTGAAGAAGTAGCTGAATCTGAATCAATGTTTTCAATTCCAAGTGATATACAATTTGATTTTCAAGATTCTTCACAAGCAAATGATGCATTTTACAGCTTCAATGGATTTTCAGAGAGCATGTTCTATGATGATAATATTGGTTTTGAGTATTTTGATTTTGGATTAGAAAGCTTGCAGACACAGACACAGACACATAAGGATCAAGACTTTTTTCAAGATATTGATGATTTATTTGCTTCAGATACTGTTCTTGCTCTTTAA 936 0.4006 MTTKKNTHRLNLTKENTPKQPFPKIVRITVTDNDATDYSSDEEESSTTRFLERNRGIKFVDEIIIEPCTVSKNNNSINNSVVSRKRNRNRTTGVRKTRAPVNIPAKKYRGVRQRPWGKWAAEIRDPARGVRVWLGTFQTAEEAAIVYDNAAIKLRGPDALTNFITPPVSATATCPLSPPPPPPENEIPLPSLPLPVNSGEESQSQNNNNKSLFSPTSVLQCCSSSEEVAESESMFSIPSDIQFDFQDSSQANDAFYSFNGFSESMFYDDNIGFEYFDFGLESLQTQTQTHKDQDFFQDIDDLFASDTVLAL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00307 311 MobiDBLite consensus disorder prediction 196 210 - -
Mepo5g00307 311 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Mepo5g00307 311 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Mepo5g00307 311 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Mepo5g00307 311 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Mepo5g00307 311 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Mepo5g00307 311 MobiDBLite consensus disorder prediction 171 210 - -
Mepo5g00307 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 245 - -
Mepo5g00307 311 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Mepo5g00307 311 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
Mepo5g00307 311 CDD AP2 106 163 IPR001471 GO:0003700|GO:0006355
Mepo5g00307 311 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Mepo5g00307 311 MobiDBLite consensus disorder prediction 172 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00307 Mepo-Chr5 2706549 2707990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00307 24 311 AP2-EREBP Transcription Factor Family AT4G23750 39.938 4.53e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo5g00307 AP2 5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00307 - - mtr:11438409 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00307 5 2706549 2707990 Mepo5g00307 5 2706549 2707990 ECH
Mepo5g00307 5 2706549 2707990 Mepo2g04698 2 55350817 55351859 PCT