Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00304 ATGGAAACCGTGGACATTGTCGGCATCACCCTTAATGTATTTCTCGGGTTCATCTTGTTTGCATTCATCATATATTTCTGCTGCGATGGTTTATCCTCGATTAATCTACCGCCACCATCACCACCATCACCGGCAAAAATTCAAGCAGTGATAAATTCTCTCCCTGGATTCCCTTTCTTATCCATTACGCCTCACGACTCCACTGAATGCTCGGTTTGCTTAGCGGAGTTCAGTGAGTCGACAGATCTCCTCCTCCGTCGTCTCCCATGTCTCCATGTATTCCACGTCGTCTGCATTGATATTTGGTTTCGTGAGCGCCTGACATGCCCCTTCTGTAGATCGGAACTTCTCCCTTCCTCTTCTTCTTCTTCTTCTGAGGTACATGTTAGTGTCGTATAG 399 0.4662 METVDIVGITLNVFLGFILFAFIIYFCCDGLSSINLPPPSPPSPAKIQAVINSLPGFPFLSITPHDSTECSVCLAEFSESTDLLLRRLPCLHVFHVVCIDIWFRERLTCPFCRSELLPSSSSSSSEVHVSVV 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00304 132 Pfam Ring finger domain 69 113 IPR001841 -
Mepo5g00304 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 123 - -
Mepo5g00304 132 ProSiteProfiles Zinc finger RING-type profile. 70 113 IPR001841 -
Mepo5g00304 132 SMART ring_2 70 112 IPR001841 -
Mepo5g00304 132 SUPERFAMILY RING/U-box 50 119 - -
Mepo5g00304 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00304 Mepo-Chr5 2680839 2681237 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00304 50 114 Rapid Response to Elicitors AT3G16720 56.061 3.97e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00304 - K10664 rsz:108807667 75.485