Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00299 ATGGCTCCTTCTTTAGTTCGATTATATGAGCAAATGCCCGAACCAAAATATGTTATTGCTATGGGAGCCTGTACAATTACAGGAGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGGGGCGTGGATAAGCTAATTCCTGTGGATGTCTATTTGCCAGGCTGTCCACCTAAACCGGAAGCCGTTATAGATGCTATAACAAAACTTCGTAAGAAAATTTCTCGCGAAATCTATGAAGATCCAATTTGTTATCAACGAGAGAATAGCTGGTTCATCTTGCTTGCATACATCATATTACGCATATTACTCCCCATTTTATCCCCGTCACGGAAACCATCACCGGCGGAAATTCAAGCAGTGATAGACTCTATCCCTGGACTCCCTTTCTTAACCGTTACGCCTCACGACTCCACTGAATGCTCGGTTTGCTTAGCGGAGTTCAGTGAGTCGACAGATCTCCTCCTCCGTCGTCTCCCATGTCTCCATGTATTCCATGCCATCTGCATTGATACTTGGTTTCGCCAGCGCCTGACATGCCCCTTCTGTAGATCGGAACTTCCCCCTTCTTCTTCTGAGGTACATGTTAGTGTCATATAG 597 0.4523 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDPICYQRENSWFILLAYIILRILLPILSPSRKPSPAEIQAVIDSIPGLPFLTVTPHDSTECSVCLAEFSESTDLLLRRLPCLHVFHAICIDTWFRQRLTCPFCRSELPPSSSEVHVSVI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00299 198 PANTHER NADH DEHYDROGENASE 1 84 - -
Mepo5g00299 198 SMART ring_2 140 182 IPR001841 -
Mepo5g00299 198 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 41 57 IPR006138 GO:0008137|GO:0048038|GO:0051539
Mepo5g00299 198 SUPERFAMILY RING/U-box 120 189 - -
Mepo5g00299 198 Gene3D - 1 90 - -
Mepo5g00299 198 Pfam Ring finger domain 139 183 IPR001841 -
Mepo5g00299 198 ProSiteProfiles Zinc finger RING-type profile. 140 183 IPR001841 -
Mepo5g00299 198 FunFam NAD(P)H-quinone oxidoreductase subunit K, chloroplastic 30 94 - -
Mepo5g00299 198 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 3 69 IPR006137 GO:0051536
Mepo5g00299 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 190 IPR013083 -
Mepo5g00299 198 SUPERFAMILY HydA/Nqo6-like 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00299 Mepo-Chr5 2651203 2653320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00299 120 184 Rapid Response to Elicitors AT3G16720 51.515 8.10e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00299 K05582 - cit:4271140 174.481