Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00276 ATGGCTACCTTCAAAATTTATTTCTTATTTCCCGTAGTGAGCTTCTTGCTTTTTCACTCAACAAAAAGCACAAATCCAATTTGTGACAAGAGACATTGTGGAAACTCGTCAGAACTTTTTTTTGAGTTCCCTTTCCAATTAAGAGAAGAAAATCAAATTACCAATACTCAAAGTGATCGATGTGTGTACCCAGGATTTGAAGTTTATTGCAAAAATAATAAGCAACCTTTGATTACACTCTCCAATGGAAGAGAATTTGTTGTCAAACATATTTACCATGAGAGACAAAGAATTTTGGTCGAGGATGTCAATGGTTGTAAACCAAGAAGGTTCATTCAAAACATAGACATCAACGATGATTCACCTTTCCAATTGGACAACTCTTATGAAAATGATCATTATGAAAACGTAACATTTCTCAATTGTACAAACAATGTTGAAAAGGAACCATTTGATTATCTTTCTAATATACCTTGTCTAAGCAGTGGCAATTATACGATTGTGTATACCATACAATCACCTCTTATTAATTTGTGGAATTCATCGTGTAGTGAAATTGGGTTTGCTAAGGTTCCAGTCAAAAATAATTATGGTGAACCAATGGTAATCAATGATGGACTAAACTCTGATATATTGTTGCGATGGAATACACCTCTTTGTAAGTGTGAAGCAGATCAATCATGTGGCTTTCTAGCGGATACGGGTCTTTATGTTACTTGTTACGATAACAACGGACATTTTGGTCCCCCAGGTGGGAATGCTACAGCTCCAAAGGCTAAAAATATATACTTTTTTCCAGTAGTATGGGGAATATCTGGACTTCTGTTCTTCATGTGGGTAACTTTATCCGTATGTAAAGATAGACAGCAAAACCATAGCCAACAAACACAAACAATTACGAACATAGAACCAAGTAATCAGGAACCTCATTGGTTTGTGTTTGGACTTGATCATTCAAGGATAGAACAATATCCAAAGATTCAACTAGCAGAGAGTGGACAATTGCCTAAATCCATTGACAATGTTTGTTCCATATGTCTTAGTGAGTACAAACCCATGGAGACATTAAGAAGTATACCTCAATGTAATCATCATTTCCATGCAGATTGTATAGATGTGTGGCTCAAGATGAATGCTACTTGCCCTTTATGTAGAAATTTGCCTGAGTGA 1170 0.3564 MATFKIYFLFPVVSFLLFHSTKSTNPICDKRHCGNSSELFFEFPFQLREENQITNTQSDRCVYPGFEVYCKNNKQPLITLSNGREFVVKHIYHERQRILVEDVNGCKPRRFIQNIDINDDSPFQLDNSYENDHYENVTFLNCTNNVEKEPFDYLSNIPCLSSGNYTIVYTIQSPLINLWNSSCSEIGFAKVPVKNNYGEPMVINDGLNSDILLRWNTPLCKCEADQSCGFLADTGLYVTCYDNNGHFGPPGGNATAPKAKNIYFFPVVWGISGLLFFMWVTLSVCKDRQQNHSQQTQTITNIEPSNQEPHWFVFGLDHSRIEQYPKIQLAESGQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00276 389 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 388 IPR046948 -
Mepo5g00276 389 SMART ring_2 343 384 IPR001841 -
Mepo5g00276 389 Pfam Wall-associated receptor kinase galacturonan-binding 28 102 IPR025287 GO:0030247
Mepo5g00276 389 SUPERFAMILY RING/U-box 342 386 - -
Mepo5g00276 389 CDD RING-H2_EL5-like 343 385 - -
Mepo5g00276 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 388 IPR013083 -
Mepo5g00276 389 ProSiteProfiles Zinc finger RING-type profile. 343 385 IPR001841 -
Mepo5g00276 389 Pfam Ring finger domain 342 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00276 Mepo-Chr5 2421876 2424807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00276 42 388 C3H Transcription Factor Family AT2G25410 33.426 2.64e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00276 - - psat:127123903 506.138