Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00275 ATGGCTACTTTGAAAATTTCTTTCATATTTTCCATGGTTCTCTTGCTTTTTCACTCAACAAAAAGCACAACTCCTCACCTCAAAAAAAAATTCAGACCTCCAATTTGTGACAAGAGACGATACTGCGGAACCCAAGAGTTAGAACTTTTTTTTGAGTTCCCTTTCCAATTAAGAGAAGAAAATCAAATTAACAATAATCAAAGTGATCGATGTGTGTACCCAGGATTTGAAGTTTATTGCAAAAATAATAAGCAACCTTTGATTACACTCTCAAATGGAACAGAATATGTTATCAAAAATATATCCTATGAGAGCCAAAGAATATGGATGGATGATCCTAATGATTGTCCACCAAGAAGGTTCCTTCAAAACATACACCTCAACTATGATTCACTTTTCCAACGGGACAGATTTCTTCAAAGTACTCATTATTATGAAAACGTAACATTTCTCAACTGTACTAAAAATGCAAAGGAACCAATATTTGATCATCTTCCTAATAATATACCTTGTCTAAGCAATGACAACTATTTGATCATGTATGCGTTACAATCACTTCTTGGTAATTTGTGGAGTCCATCGTGTCGTGAGATTGGATCTGCTAAGGTTCCAGTTAAAGATAAATCCGGTCAACCAATGGTTATCATGGAAGGACTTTACTCTAATTTAATGTTGCGGTGGAATACACCTCTTTGTGGTTGCAAAGCACCACAATATTGTGGCTTTGCATCGGATAGGGGTCTTGGTGTTACTTGTTACAGTTACTTTGATATGCCAGGCAGAAATCCTACAACTCCAAGTCCAAAGCATGGAAATATCTACTTTTTTGAAGTAGTATGGGGAATAACTGGAATTTTGCTCTTCATGTGGGTAACTCTATCCCTATGTAAAGATAGACAGCAAAACCATATCCAACAAACACAAACAATTATCATTATAGAACCAAGTGATCGGGAACCCCCTTGGTTTGTGTTTGGACTTGATCATTCAAGGATAGAACAATATCCAAAGATTCAACTAGCAGAGAGTGGACAATTGCCTAAATCCATTGACAATGTTTGTTCCATATGTCTTAGTGAGTACAAACCCATGGAGACATTAAGAAGTATACCTCAATGTAATCATCATTTCCATGCAGATTGTATAGATGTGTGGCTCAAGATGAATGCTACTTGCCCTTTATGTAGAAATTTGCCTGAGTGA 1203 0.3624 MATLKISFIFSMVLLLFHSTKSTTPHLKKKFRPPICDKRRYCGTQELELFFEFPFQLREENQINNNQSDRCVYPGFEVYCKNNKQPLITLSNGTEYVIKNISYESQRIWMDDPNDCPPRRFLQNIHLNYDSLFQRDRFLQSTHYYENVTFLNCTKNAKEPIFDHLPNNIPCLSNDNYLIMYALQSLLGNLWSPSCREIGSAKVPVKDKSGQPMVIMEGLYSNLMLRWNTPLCGCKAPQYCGFASDRGLGVTCYSYFDMPGRNPTTPSPKHGNIYFFEVVWGITGILLFMWVTLSLCKDRQQNHIQQTQTIIIIEPSDREPPWFVFGLDHSRIEQYPKIQLAESGQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00275 400 SUPERFAMILY RING/U-box 353 397 - -
Mepo5g00275 400 Pfam Ring finger domain 353 396 IPR001841 -
Mepo5g00275 400 CDD RING-H2_EL5-like 354 396 - -
Mepo5g00275 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 399 IPR013083 -
Mepo5g00275 400 Pfam Wall-associated receptor kinase galacturonan-binding 36 112 IPR025287 GO:0030247
Mepo5g00275 400 SMART ring_2 354 395 IPR001841 -
Mepo5g00275 400 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 399 IPR046948 -
Mepo5g00275 400 ProSiteProfiles Zinc finger RING-type profile. 354 396 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00275 Mepo-Chr5 2418219 2419514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00275 42 399 C3H Transcription Factor Family AT2G46495 30.707 9.63e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00275 - - mtr:11436218 553.903