Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00256 ATGCAAGGAAGCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCAGAGGAGGATGACTTGATGGACGAAGAAGTTGCTGTTGACGCCGAAGCTTCTCCACCACATCCCAAACTCAAATCCGCCATCACTTCCGTTCCCAAAAAAACCAAAGGTCGCGGTTTCCGTCAGGATTCCGATTCCTCCAACCGTAACTCTCGTCTTGCTGATTCCGGTTTCGATACCCTCACTGCTGATGGTGGTCCTGGTCCTCAACGATCTGTTGAAGGATGGATTATTTTGGTGACTGGTGTGCATGAGGAAGCTCAAGATGATGATTTGCAGAATGCTTTTGGTGAATATGGAGATATTAAGAATCTTCACTTGAATCTTGATCGCCGTACTGGTTTTGTTAAGGGTTATGCACTGATTGAATATGAGCGCTCCGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGTGCTTCTCACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATTAACGAGTCAGTTAGAAGAAACAGACCTCAGCGGCGCTCCAGGAGTCCTCCTAGGAGGAGATATTGA 582 0.4725 MQGSAADGEALDFEPEEDDLMDEEVAVDAEASPPHPKLKSAITSVPKKTKGRGFRQDSDSSNRNSRLADSGFDTLTADGGPGPQRSVEGWIILVTGVHEEAQDDDLQNAFGEYGDIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSVLLTQTIYVDWAFSSGPINESVRRNRPQRRSRSPPRRRY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00256 193 PANTHER RNA-BINDING PROTEIN 8A 7 192 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mepo5g00256 193 MobiDBLite consensus disorder prediction 174 193 - -
Mepo5g00256 193 SUPERFAMILY RNA-binding domain, RBD 82 192 IPR035979 GO:0003676
Mepo5g00256 193 PRINTS RNA binding motif protein 8 family signature 43 55 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mepo5g00256 193 PRINTS RNA binding motif protein 8 family signature 137 153 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mepo5g00256 193 PRINTS RNA binding motif protein 8 family signature 155 167 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mepo5g00256 193 PRINTS RNA binding motif protein 8 family signature 81 95 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mepo5g00256 193 SMART rrm1_1 91 164 IPR000504 GO:0003723
Mepo5g00256 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Mepo5g00256 193 CDD RRM_RBM8 84 171 IPR033744 GO:0003729
Mepo5g00256 193 Gene3D - 10 186 IPR012677 -
Mepo5g00256 193 MobiDBLite consensus disorder prediction 10 26 - -
Mepo5g00256 193 FunFam RNA-binding protein 8A 37 181 - -
Mepo5g00256 193 MobiDBLite consensus disorder prediction 1 83 - -
Mepo5g00256 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00256 Mepo-Chr5 2235737 2240406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00256 92 163 Eukaryotic Initiation Factors Gene Family AT4G34110 31.944 5.93e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00256 K12876 - gmx:100778595 298.13