Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00221 ATGAATATGATACTTTTTGGTGCAAATAACTTCACCACATTGATGTTGCAATCCAAAAAGCTTATGCACCATGTATTCCCCAAATTTTGTATATTGCAAAATCTCTATTACACTTCAACTGCACAACCAGAAACCATAGCCAGAAACGTAAACACACAAATACACACTCTTTCATTGCAAGGAAACCTTGAAAAAGCACTTTCACTTGTTTACACCAACCCTTTTTTAACCCTTCAAGACTATGCATTTCTCTTCCATGCTTGTGCTCAGAAAAAATTCATCAAACAAGGCATGGCATTGCACCATTACATACTTAACAAACACCCCACAATTCAAAATGATGTTTTTCTTACTAATAACCTCTTAAACATGTACTGTAAATGTGGCTATTTAGATTATGCACGCTACCTGTTTGATCAAATGCCGAGAAGAAATTTTGTTTCTTGGACTGTTCTTGTTTCTGGGTATGCGCAGTTTGGTTTAATTAGAGAGTGTTTTGCTTTATTCTCTGGTATGTTGGCTTGTTTTCACCCCAATGAATTTGCTTTTGCAAGTGTGCTTAGCGCTTGTGAGGAGCAAGATGTTAAATATGGCTTGCAGGTACATGCTGTTGCTTTGAAAATGTCATTGGATTGCAATGTGTATGTTGCAAATGCTCTTATTACGATGTATAGCAAGTGTTCTGGTGGTTTCGGTGGAGGTTGTGATCATACTTCGGATGATGCATGGACTGTTTTCGAGTCGATGGAGTATAGAAATCTTATATCTTGGAATTCGATGATTTCAGGTTTTCAATTCCGTGGACTTGGCGACAAAGCTATTGGTCTGTTTGCGCATATGTATTGTAATGGAATTGGGTTCAACAATGCCACATTACTCGGCGTTTTATCTTCTTTGAATCATTGCACGAGTACTTCAGATGACATCAACAACACACGTCATCTGAAGAACTGTTTTCAATTACACTGTCTCACAGTTAAAAGTGGTCTTATTTCAGAAGTTGAAGTGGTAACTGCATTGGTAAAATCCTATGCAGACCTAGGGGGTCACATTTCTGACTGTTTTAAGCTCTTCCTTGATACAAGCGGCGAACGTGATATTGTGTCATGGACTGCTATTATTTCTGTGTTTGCGGAGCGCGATCCTGAGCAAGCTTTCCTTCTTTTCTGTCAACTTCATCGAGAAAATTTTGTGTTGGACCGGCACACATTCTCAATTGCCTTAAAAGCTTGTGCGTACTTTGCCACTGAGAAAAATGCAACCGAAGTTCACTCACAAGTAATTAAACAAGGGTTTCACGACGACACAGTTGTTTCAAATGCCTTGATACATGCTTATGGGAGGTCTGGCTCCTTAAGTTTGTCGGAACAAGTTTTTACCGAAATGGGTTGCCACGATTTGGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATTCACGGTCGAGCTAAAGATGCACTAGATCTCTTTAAGCGAATGGATGTTCATCCAGATTCTGCAACCTTTGTTGCGCTTCTCGCGGCATGCAGCCACGCTGGACTTGTTGAAGAAGGAACACAAATTTTCAACTCTATGACTGAAAGTCACGGTATTGCTCCTCAATTAGATCATTATTCCTGCATGGTTGACCTTTATGGACGAGCTGGAAAGATATTTGAGGCGGAGGAGTTGATACGCAAAATGCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTCGGATCTTGCAGGAAGCATGGTGAGGCTGACTTGGCCAAATTGGCAGCCGATAAATTCAAAGTGTTAGATCCTAAAAACTCGTTGGCGTACATACAGATGTCAAACATATATTCCTCTGGAGGTAGTTTTATTGAAGCTGGATTGATTCGGAAGGAAATGAGAGACTCTAAAGTGAGAAAAAGACCTGGATTAAGCTGGGTTGAGGTTGGGAAGCAGGTTCATGAATTCACATCTGGTGGCCAACATCATCCGAAAAGGCAGGCTATATTGAGCCGGCTCGAGACATTGATTGGACAGTTGAAAGAAATGGGCTATGCTCCAGAGATTGGCTCAGCTTTGCATGACATTGAAGTGGAGCACATAGAAGACCAATTGTTTCATCATAGTGAGAAGATGGCATTGGTATTTGCTATAATGAATGAAGGAATTTTGCCTTGTGCTGGAAATGTCATTAAAATTATGAAGAATATCCGTATTTGTGTGGATTGTCATAACTTTATGAAATTAGCATCAAAACTGTTTCAGAAGGAGATTGTCGTAAGAGATTCAAATCGCTTTCACCATTTCAAATATGCAACATGCTCTTGTAATGACTATTGGTAA 2325 0.3978 MNMILFGANNFTTLMLQSKKLMHHVFPKFCILQNLYYTSTAQPETIARNVNTQIHTLSLQGNLEKALSLVYTNPFLTLQDYAFLFHACAQKKFIKQGMALHHYILNKHPTIQNDVFLTNNLLNMYCKCGYLDYARYLFDQMPRRNFVSWTVLVSGYAQFGLIRECFALFSGMLACFHPNEFAFASVLSACEEQDVKYGLQVHAVALKMSLDCNVYVANALITMYSKCSGGFGGGCDHTSDDAWTVFESMEYRNLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIGFNNATLLGVLSSLNHCTSTSDDINNTRHLKNCFQLHCLTVKSGLISEVEVVTALVKSYADLGGHISDCFKLFLDTSGERDIVSWTAIISVFAERDPEQAFLLFCQLHRENFVLDRHTFSIALKACAYFATEKNATEVHSQVIKQGFHDDTVVSNALIHAYGRSGSLSLSEQVFTEMGCHDLVSWNSMLKSYAIHGRAKDALDLFKRMDVHPDSATFVALLAACSHAGLVEEGTQIFNSMTESHGIAPQLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGEADLAKLAADKFKVLDPKNSLAYIQMSNIYSSGGSFIEAGLIRKEMRDSKVRKRPGLSWVEVGKQVHEFTSGGQHHPKRQAILSRLETLIGQLKEMGYAPEIGSALHDIEVEHIEDQLFHHSEKMALVFAIMNEGILPCAGNVIKIMKNIRICVDCHNFMKLASKLFQKEIVVRDSNRFHHFKYATCSCNDYW 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00221 774 Pfam DYW family of nucleic acid deaminases 678 774 IPR032867 GO:0008270
Mepo5g00221 774 Gene3D Tetratricopeptide repeat domain 378 525 IPR011990 GO:0005515
Mepo5g00221 774 Gene3D Tetratricopeptide repeat domain 47 192 IPR011990 GO:0005515
Mepo5g00221 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Mepo5g00221 774 Gene3D Tetratricopeptide repeat domain 193 311 IPR011990 GO:0005515
Mepo5g00221 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 533 IPR002885 -
Mepo5g00221 774 Gene3D Tetratricopeptide repeat domain 526 597 IPR011990 GO:0005515
Mepo5g00221 774 NCBIfam pentatricopeptide repeat 119 147 IPR002885 -
Mepo5g00221 774 NCBIfam pentatricopeptide repeat 538 561 IPR002885 -
Mepo5g00221 774 NCBIfam pentatricopeptide repeat 468 493 IPR002885 -
Mepo5g00221 774 NCBIfam pentatricopeptide repeat 501 533 IPR002885 -
Mepo5g00221 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 496 IPR002885 -
Mepo5g00221 774 FunFam Pentatricopeptide repeat-containing protein mitochondrial 197 313 - -
Mepo5g00221 774 FunFam Pentatricopeptide repeat-containing protein At2g34400 424 671 - -
Mepo5g00221 774 Pfam PPR repeat 501 528 IPR002885 -
Mepo5g00221 774 Pfam PPR repeat 119 146 IPR002885 -
Mepo5g00221 774 Pfam PPR repeat 537 562 IPR002885 -
Mepo5g00221 774 Pfam PPR repeat 147 173 IPR002885 -
Mepo5g00221 774 Pfam PPR repeat 439 463 IPR002885 -
Mepo5g00221 774 Pfam PPR repeat 255 285 IPR002885 -
Mepo5g00221 774 Pfam PPR repeat 468 493 IPR002885 -
Mepo5g00221 774 Pfam E motif 580 642 IPR046848 -
Mepo5g00221 774 SUPERFAMILY TPR-like 87 621 IPR011990 GO:0005515
Mepo5g00221 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Mepo5g00221 774 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 86 707 IPR046960 GO:0003723|GO:0009451
Mepo5g00221 774 FunFam Pentatricopeptide repeat-containing protein 94 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00221 Mepo-Chr5 1970389 1972713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00221 81 774 Glycoside Hydrolase AT3G49170 34.936 3.83e-133 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00221 - - mtr:11436182 1510.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00221 5 1970389 1972713 Mepo4g04331 4 53093948 53100049 PCT