Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00189 ATGATGAGGTTGAAGACATATGCTGGTCTTAGTTTGATGGCAACTTTGGCTATTGCGTACCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTTAACATGGGTTTGGTTATTATGTGTGTTCTGTGGCAACTAACTAAAAAGGTATTCTTGGGTAATCTTCGAGAGGCTGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAGATCCTCTTTGCAATTACTATTTTTAGGCAGGATTTTTCAGTTACATTCCTTGCGATGGTCACAGCATTGTTGTTAATCAAGGCTTTGCATTGGTTAGCTCAAAAGAGAGTCGAGTACATCGAGACCACTCCTACAGTGACCACGTTGTCGCATATTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTTCTCGATAGCATTTTCTTATACAGCTCTTTGAAGCATTTGATACAAACATGGCAGGCTTCCGTTTCACTGTTCTTTGCTTTCGAGTACATGATACTAGCAACAACAACAGTATCGATTTTCGTAAAATATGTTTTCTATGTTACTGACATACTTATGGAGGGACAGTGGGATAAGAAACCAGTCTTCACATTTTACCTGGACCTTGTTAGGGACTTGCTGCACTTGTCCATGTATCTGTGCTTCTTCTTTGTTATTTTTGTAAACTACGGAATTCCCTTGCACCTAATACGGGAGCTATACGAGACATTTAGGAACTTCAAAGCTCGCATTGCAGATTACATTAGATATCGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGAAGCAACCCCCGAAGAGCTCAATGCTAGTGATGCAACTTGTATTATCTGTCGTGAAGAGATGACTGCAGCCAAGAAACTGATATGCGGACACCTTTTTCATGTTCATTGCCTTCGATCATGGCTAGAGCGACAACACACTTGCCCTACTTGCAGAGCCTTGGTTGTACCCCCAGAAAATGGAACAACTGTTGCTGGAGGTCAGCAAGGATCACAATCAAATGGTCATCAACAGGGCACTGGAAGTACAGGTCAAACCGAGCTTGGCAATGGGGTGGCAACTGATAGTTTGAGTCGGCATCAAGCTAGACTCCAAGCAGCTGCTGCTGCTGCTTCAATATATGAGAAGTCTTATGTTTATCCTCCCGCAACTTCTTTTGTTCGATCTCCTGGGTACACTAATTATCCCCCAGTTTCTGAATCTACCAGTGTTGATCTTAATGGAGAACAAGCTTCCAGTCAACAAGCACAAAATCAGTTTCATATCCCTGGTGGGCCAACAAATGTACCCTTTCCTCCAATGGGACACTTCCATTTTCTTCCTTCCCAACCATACATGACCCCTTTGAATTATGGAGAGGGGTTTGAAAATGATCTAAATATCTCAAAGTCTCATCTGGAAGCTCATAAAAACATTCTACAGCAACAGATTGAGATTCTGCAAAATCAGCTACAGAATCTGCAGAGCACAGAGGCTAAGAGAAGTGTAGATGAAGGCACACCATCATCAGAAAGCAGAGGCAAGCTTAGCACTTCGTCGGAGATTCAAGATGGAAAAGCATAA 1617 0.4212 MMRLKTYAGLSLMATLAIAYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKVFLGNLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTTLSHIRIVSFMGFLLLLDSIFLYSSLKHLIQTWQASVSLFFAFEYMILATTTVSIFVKYVFYVTDILMEGQWDKKPVFTFYLDLVRDLLHLSMYLCFFFVIFVNYGIPLHLIRELYETFRNFKARIADYIRYRKITSNMNDRFPEATPEELNASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSNGHQQGTGSTGQTELGNGVATDSLSRHQARLQAAAAAASIYEKSYVYPPATSFVRSPGYTNYPPVSESTSVDLNGEQASSQQAQNQFHIPGGPTNVPFPPMGHFHFLPSQPYMTPLNYGEGFENDLNISKSHLEAHKNILQQQIEILQNQLQNLQSTEAKRSVDEGTPSSESRGKLSTSSEIQDGKA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00189 538 SUPERFAMILY RING/U-box 272 336 - -
Mepo5g00189 538 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Mepo5g00189 538 Pfam Ring finger domain 291 330 IPR001841 -
Mepo5g00189 538 Coils Coil 481 511 - -
Mepo5g00189 538 MobiDBLite consensus disorder prediction 340 374 - -
Mepo5g00189 538 PANTHER RING ZINC FINGER PROTEIN 1 515 - -
Mepo5g00189 538 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Mepo5g00189 538 CDD RING-H2_synoviolin 289 330 - -
Mepo5g00189 538 MobiDBLite consensus disorder prediction 507 538 - -
Mepo5g00189 538 SMART ring_2 292 329 IPR001841 -
Mepo5g00189 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00189 Mepo-Chr5 1700636 1705598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00189 1 526 C3H Transcription Factor Family AT3G16090 65.472 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00189 K10601 - gmx:100816441 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00189 5 1700636 1705598 Mepo5g00189 5 1700636 1705598 ECH