Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00178 ATGGAGGCTCTTGATTCTGTGGATGACCTATGGGGTTTCTTATCTGACATAGGCGAGGATGATTATGAGAAACCTACAAAAGCCTTTCCTTCATTGGACCTGGATGATTCCAACCATTCATTTTCTGAGTTTGTAGTAGAGGATCTTGAATGGCTATCCAACAAAGATGCATTTCCAGCTGTTGAAACATTTGTTGACTTTTCCTGTATTCAACCAGATATTTCACAGAATCAAAAGATAGCACCAATTGTTGAGAACAGCAGAAGCAGTAGCAACAGCAATAACAGTTCCAACAGCATTACACTCTTAAGTGGCTGCAATCACATTAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGTAAGCCTCGCCTTGGCATTTCTGATACCTCGAACCATCAATTTGCGTGGAAACAACCGAGTAACAAAACTTCCAAAGAACAAGCGAAGCAGACCTCAACCATTGGGAGGCAATGTTATCATTGTGGAGCTGATAATACTCCGCTATGGCGTGCAGGTCCTAATGGTCCAAAAACACTTTGTAATGCATGTGGGGTCAGGTATAGGTCTGGCCGACTTGTACCTGAATACCGCCCTGCAAAGAGCCCAACTTTTTGCAGCAATGTGCATTCTAATTCCCACAGGAAAGTAGTGGAAATAATTCGTAGTAAGCCTCACCTCGGAATTTCTGACACATTGAACCATCAATTCACGTGGAAACAGCCGAGTAACAAAACATCCAAAGAACAATCGAAGCAAACCTCAACCATTGGGAGGAAATGTTATCATTGTGGAGCTGATAATACTCCGCAATGGCGTGCAGGTCCCGATGGTCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTCCAGGGCTGGCAGACTTGTACCTGAATACCGCCCTGCAAATAGCCCAACTTTTTGCAGCGATGTGCATTCTAATTCCCACAGGAAAGTAGTGGAAATAAGGAAGCAGAAGAGAATGAGAATGGGATGA 996 0.4408 MEALDSVDDLWGFLSDIGEDDYEKPTKAFPSLDLDDSNHSFSEFVVEDLEWLSNKDAFPAVETFVDFSCIQPDISQNQKIAPIVENSRSSSNSNNSSNSITLLSGCNHIKFPVRARSKSRSKPRLGISDTSNHQFAWKQPSNKTSKEQAKQTSTIGRQCYHCGADNTPLWRAGPNGPKTLCNACGVRYRSGRLVPEYRPAKSPTFCSNVHSNSHRKVVEIIRSKPHLGISDTLNHQFTWKQPSNKTSKEQSKQTSTIGRKCYHCGADNTPQWRAGPDGPKTLCNACGVRSRAGRLVPEYRPANSPTFCSDVHSNSHRKVVEIRKQKRMRMG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00178 331 Gene3D - 153 204 IPR013088 GO:0006355|GO:0008270
Mepo5g00178 331 Gene3D - 255 305 IPR013088 GO:0006355|GO:0008270
Mepo5g00178 331 PANTHER GATA TRANSCRIPTION FACTOR 34 234 - -
Mepo5g00178 331 CDD ZnF_GATA 158 215 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 ProSiteProfiles GATA-type zinc finger domain profile. 153 189 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 ProSitePatterns GATA-type zinc finger domain. 159 184 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 FunFam GATA transcription factor 153 203 - -
Mepo5g00178 331 MobiDBLite consensus disorder prediction 115 150 - -
Mepo5g00178 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 216 - -
Mepo5g00178 331 CDD ZnF_GATA 260 307 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 ProSitePatterns GATA-type zinc finger domain. 261 286 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 PIRSF Txn_fac_GATA_plant 2 243 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mepo5g00178 331 PIRSF Txn_fac_GATA_plant 228 331 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mepo5g00178 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 257 318 - -
Mepo5g00178 331 ProSiteProfiles GATA-type zinc finger domain profile. 255 291 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 FunFam GATA transcription factor 14 255 329 - -
Mepo5g00178 331 MobiDBLite consensus disorder prediction 124 150 - -
Mepo5g00178 331 SMART GATA_3 153 203 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 SMART GATA_3 255 305 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 Pfam GATA zinc finger 261 293 IPR000679 GO:0006355|GO:0043565
Mepo5g00178 331 Pfam GATA zinc finger 159 192 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00178 Mepo-Chr5 1635282 1636676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00178 243 325 C2C2-Gata Transcription Factor Family AT3G24050 66.667 9.37e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo5g00178 GATA 1.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00178 - - psat:127090991 321.627