Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00164 ATGACAATCCCAGGCAATGGTCAAAGTGGTCTGAAGAAGGGGCCATGGAGTCCAGAAGAGGATAAAATATTAGTAGATCACATTCAGAAACATGGTCCTGGATGTTGGAGAGATCTTCCGAGGCGTGCAGGATTAAACAGATGTGGAAAGAGCTGTAGGCTAAGATGGACAAACTACTTAAGTCCTGATATTAAAAGAGGGAAATTTTCTGATGAAGAACAGGAACTCATCATCAATTTACATTCAACTCTTGGAAATAAGTGGGCAGCTATAGCAAGAAATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTAAAGAAAAAGCTAATACAAAAGGGGTTAGATCCGGTGACACACAGGCCAAGAACAGATTACATAGACCTTCCTAGCTATCTACAACAGATAATATTGAATGCTGCAAATATTGTAGCCAATTTTGACATTAATGATCTAAGGTCACAATATTCACTTCCCCAGGAAAGTTTGATAAATGATCTTTTGGAATTTAATAATATTCACTCTAATAATGACCTACAAAGTTCCAATATTGGTTTTTCATCTCAAATAATTCAGCCTAATTTGCAAAATTTTGAGGCCCCTATTCAGCAATTACGACCAATACAAGAATGTGAGTACTCTGAGAAATTCGATGAACAAATTGGTTCGACAAATGTTGCTACTGCAATATCATCATTGAATTCCCTTCCAAAGCTGGTTTCAGTTTCGCCTCAATGTTCACCGATTAAGGTTAGCGAAGAAAACATGATAAATTTTAATCCTTCTTCCAGCAGCTTTGAAGCTAGGGGAGATATCTTGAATGAGGATGCAAATGATGCTTATAGGAAAAATTTAATAGAGTGGGCAGCTATAGCAACACATCTTCCAGGAAGGAGTGACAATGAAATTAAGAGTTTTTGGAACACACATTTGAAGAAAAAGCAGTTATCACAGGAATGTGAGTACTCACAGAAGTTTGATGAACAAATTGGTTCCACAGATGTTTCTTCCACAATATTATCATCGAAATCGCTTCCAAAGCTGGTTCCGGTTTCAACTCAACGTTTAGTGCCAGTTAATCTAGGCGAAGAAAACATCATAAATGCAAACAATCAGTGTTGTAACACTTCTTCTTCCACAACATTTGAAACTTGGGGAGATTTCATGGATGAGGAAGCAAATGATACTTATTGGAAAGATTTCATAGAGTAA 1227 0.3676 MTIPGNGQSGLKKGPWSPEEDKILVDHIQKHGPGCWRDLPRRAGLNRCGKSCRLRWTNYLSPDIKRGKFSDEEQELIINLHSTLGNKWAAIARNLPGRTDNEIKNFWNTHLKKKLIQKGLDPVTHRPRTDYIDLPSYLQQIILNAANIVANFDINDLRSQYSLPQESLINDLLEFNNIHSNNDLQSSNIGFSSQIIQPNLQNFEAPIQQLRPIQECEYSEKFDEQIGSTNVATAISSLNSLPKLVSVSPQCSPIKVSEENMINFNPSSSSFEARGDILNEDANDAYRKNLIEWAAIATHLPGRSDNEIKSFWNTHLKKKQLSQECEYSQKFDEQIGSTDVSSTILSSKSLPKLVPVSTQRLVPVNLGEENIINANNQCCNTSSSTTFETWGDFMDEEANDTYWKDFIE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00164 408 FunFam MYB transcription factor 67 128 - -
Mepo5g00164 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 293 320 IPR017930 -
Mepo5g00164 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Mepo5g00164 408 CDD SANT 293 316 IPR001005 -
Mepo5g00164 408 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Mepo5g00164 408 Pfam Myb-like DNA-binding domain 293 316 IPR001005 -
Mepo5g00164 408 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Mepo5g00164 408 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Mepo5g00164 408 CDD SANT 68 111 IPR001005 -
Mepo5g00164 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 292 384 - -
Mepo5g00164 408 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Mepo5g00164 408 Gene3D - 279 334 - -
Mepo5g00164 408 SUPERFAMILY Homeodomain-like 291 322 IPR009057 -
Mepo5g00164 408 CDD SANT 15 60 IPR001005 -
Mepo5g00164 408 Gene3D - 67 130 - -
Mepo5g00164 408 FunFam MYB-related transcription factor 12 65 - -
Mepo5g00164 408 SMART sant 273 318 IPR001005 -
Mepo5g00164 408 SMART sant 65 113 IPR001005 -
Mepo5g00164 408 SMART sant 12 62 IPR001005 -
Mepo5g00164 408 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Mepo5g00164 408 Gene3D - 12 65 - -
Mepo5g00164 408 ProSiteProfiles Myb-like domain profile. 293 316 IPR001005 -
Mepo5g00164 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00164 Mepo-Chr5 1486936 1493125 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00164 292 321 MYB Transcription Factor Family AT5G16770 66.667 1.96e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g00164 Myb_DNA-binding 8.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00164 K09422 - gmx:102660452 315.849