Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00132 ATGGATGCAAACCTCGTTGGCTTTCTCATTTTCCTCGCGCTTCTCTTCCTTTCACTCGTTTCAAACTTGCTGTGTTTCCTTCATCGCCGCCGTTCCAACACAACGCCACCACCGTCGACTGTTACCGAAGCATCGGTAATTATCGACCGACTCCCTCTCTTCCGTTTCACCTCAATTTCTCGCGGCAGCTTTTCCATCGTCGGACCCACCGGCGACGTCGACGATGACTGTGCAATCTGTTTCGAACAATTCCGCGACAACGACATGCTCCGTTCTCTCCCATGTTTCCACGCATTTCACTCTTACTGCATAAGCAGATGGCTCAACACGAATTTGTCTTGTCCTCTCTGCCGCACTGTCCTCTCCGATTCCAACACCGACCTCTTGGCAATTCTCCGGTCACCTCCGTTTGACAGTATCACCGTCCAAATAGGAAGCCGGTGA 444 0.518 MDANLVGFLIFLALLFLSLVSNLLCFLHRRRSNTTPPPSTVTEASVIIDRLPLFRFTSISRGSFSIVGPTGDVDDDCAICFEQFRDNDMLRSLPCFHAFHSYCISRWLNTNLSCPLCRTVLSDSNTDLLAILRSPPFDSITVQIGSR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00132 147 CDD RING-H2_PA-TM-RING 76 118 - -
Mepo5g00132 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 128 IPR013083 -
Mepo5g00132 147 PANTHER SI:CH211-59O9.10 37 125 - -
Mepo5g00132 147 Pfam Ring finger domain 75 118 IPR001841 -
Mepo5g00132 147 ProSiteProfiles Zinc finger RING-type profile. 77 118 IPR001841 -
Mepo5g00132 147 SUPERFAMILY RING/U-box 73 122 - -
Mepo5g00132 147 SMART ring_2 77 117 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00132 Mepo-Chr5 1235638 1236536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00132 47 121 C3H Transcription Factor Family AT3G18930 42.857 1.75e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00132 K10663 - gmx:100776516 99.3673