Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00070 ATGGAGCAAGCACTTATCGGTGCACTAAACCTCGTTTCTCGAGACTTACCTCTTCCTCCTGAACTCTTCAACACCGTTTCTTCTATCTGTTACGGATCTGACTCCAAACCTCTCTCTCTCAACGCTGAGGTTGATGACGTAAATTCTGCACAAGATGATGATAGTTTATTGACTGGGCTTCAAGATGCAATTTCCAAGCAACGACCTAATTGTTCGTCTAGTTCGAAATTGAATAATGCTATGAAAGTTCGTACTCAAGCTCGGTTTCAGAATCGATTAACTCAGCTTGAAGGATTGCGTTGGAACTGGGGGGACAACCTACAGACGAAGTGCTTGCTCGAGCTTTATGGACTAAAGCTAGCGGAGTTACAGGGGAAGGTTCGAACGGAAGTGAGCTCTGAATATTGGCTTAATGTTAACTGTGCATATCCTGACAAGCAATTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGCATTGGGGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATGCGGAGAGACTATCTAGAATAGAAGAGCAAGCAAAAGGTCAGATAGAGACCAGAACAAGAAGATTTTTTGCTGAAATACTGAATGCTGTCCGTGAGTTCCAGTTACAAATCCAAGGTTCTTTGAAGAGGAGAAAACAGAGGAATGATGCTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCTGAGAAGCTGAGATTCCAAGCTTTAAAAGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACGTTGCTTCTTGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCCTTGGAAGATTCAGATGCTTTGAAGAATGGAATTTCTAAGGAATCACCTCTTGAGGAAGATGAGGATTTGATGGATTCTGATCATAATGATGACAGTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCAACCATACATTCCATTCAAGAAAAGGTAACTGAGCAACCATCTATCCTTCAAGGCGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCGTTGATAGCACATCTTATGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAACGAGTTCGCAACATGGGCTCCTAGCATTACAGCTGTTTTATATGATGGACGGATGGATGAGAGGAAAGCAATAAAGGAAGAACTTTCAGGGGAGGGGAAGTTTAATGTTCTTTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCCATTGGAAATACTTGATTGTTGATGAAGGCCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACAACAGCTACCACATTGAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAACATTTTCAATTCAGTTCAAAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTCTGCATCAAGTAATAAGGCCCTTCATACTACGAAGGAAAAAGGCTGAGGTAGAAAAGTTTCTTCCTGGTAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACCGACGTGGGCAGAGTTGGGTTAGACTATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATCGTAGGGAGGAGATCGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTCCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGCCTCATGGACATTCTTGAGGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACCGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCTGACTCACCATATTTTATGTTTCTTTTGAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGGCAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCTATTGAAGAGGTGATATTGGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCTGGCCTTTTCAATACAACGTCAACAGCCCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGCAGCTCACTTGGGACAGATGTGCCAAGCGAGAGAGAAATTAACCGCCTTGCAGCCCGATCAGATGAGGAATTTTGGCTGTTCGAGAGAATGGACGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGATGAGAACGAACTGCCAGATTGGGTATACTCTGCACTAAATAAGGATGAAAAGGCCAAAGCTTTTGACAGCAGTGCTGTTACTGGAAAGCGGCCAAGAAAAGAAGTGGTATATGCAGATACGTTAAGCGATCTACAATGGATGAAGGCTGTAGAAAGTGGACATGATGTATCTAATTCTTCAGCTAAAGGAAAAAGAAGAATCCGCCTCCCTATTGACAGCCATGCACAAACAAGTGATGACACCGGGGCAGAAGAAAGGTTGTTACAGTTAAGCAACACAATGGCAAATGAAAGATTAAATGAAGATACTTTTTATGGGACCCCTGCCTCTAAGAGGTTCAAGCATGAAGAAGTAAGTTCCCATAAACATGAAATCAAGGATACCGCTGTAAGTGGATTGAACGAGCATGTGTTTTCTTGGAATACTATTAGAAAAAAGAGATCAAGCTATCCAAGCCAGGGTTCATTATCTGATACCAGAGGGCAGAATTCAAATGGAAGAAGAGCAAGCTAA 3213 0.4208 MEQALIGALNLVSRDLPLPPELFNTVSSICYGSDSKPLSLNAEVDDVNSAQDDDSLLTGLQDAISKQRPNCSSSSKLNNAMKVRTQARFQNRLTQLEGLRWNWGDNLQTKCLLELYGLKLAELQGKVRTEVSSEYWLNVNCAYPDKQLFDWGMMRLRRPPYGIGDPFAMDADDQIRKKRDAERLSRIEEQAKGQIETRTRRFFAEILNAVREFQLQIQGSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLEDSDALKNGISKESPLEEDEDLMDSDHNDDSSDLLEGQRQYNSTIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPFLIVAPKAVLPNWVNEFATWAPSITAVLYDGRMDERKAIKEELSGEGKFNVLLTHYDLIMRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDNSYHIERRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDYGSGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYRREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMDENELPDWVYSALNKDEKAKAFDSSAVTGKRPRKEVVYADTLSDLQWMKAVESGHDVSNSSAKGKRRIRLPIDSHAQTSDDTGAEERLLQLSNTMANERLNEDTFYGTPASKRFKHEEVSSHKHEIKDTAVSGLNEHVFSWNTIRKKRSSYPSQGSLSDTRGQNSNGRRAS 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00070 1070 CDD SF2_C_SNF 670 804 - -
Mepo5g00070 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 848 IPR027417 -
Mepo5g00070 1070 PANTHER SNF2/RAD54 HELICASE FAMILY 170 978 - -
Mepo5g00070 1070 Pfam Snf2-ATP coupling, chromatin remodelling complex 882 947 IPR029295 GO:0042393
Mepo5g00070 1070 Gene3D - 601 900 IPR027417 -
Mepo5g00070 1070 SMART SnAC_2 886 947 IPR029295 GO:0042393
Mepo5g00070 1070 SMART helicmild6 709 793 IPR001650 -
Mepo5g00070 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 595 IPR027417 -
Mepo5g00070 1070 Coils Coil 884 904 - -
Mepo5g00070 1070 Gene3D - 338 594 IPR038718 -
Mepo5g00070 1070 MobiDBLite consensus disorder prediction 294 316 - -
Mepo5g00070 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 382 548 IPR014001 -
Mepo5g00070 1070 SMART ultradead3 366 559 IPR014001 -
Mepo5g00070 1070 MobiDBLite consensus disorder prediction 321 340 - -
Mepo5g00070 1070 FunFam Probable ATP-dependent DNA helicase CHR12 601 899 - -
Mepo5g00070 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 683 850 IPR001650 -
Mepo5g00070 1070 Pfam Helicase conserved C-terminal domain 680 793 IPR001650 -
Mepo5g00070 1070 MobiDBLite consensus disorder prediction 1043 1070 - -
Mepo5g00070 1070 FunFam Chromatin structure-remodeling complex protein SYD 361 604 - -
Mepo5g00070 1070 Pfam SNF2-related domain 373 661 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00070 Mepo-Chr5 762503 769710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00070 676 821 RAD5 or RAD16-like Gene Family AT5G43530 36.667 9.69e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo5g00070 SNF2_N 8.5e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00070 - - gmx:100775993 1732.61