Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00033 ATGGAACCTACTGAGCTTATTTCTCAAGAATGGACTTCTCTCAGTGGACTCTACACTGCTGAGGAATCTGATTTTATGAACCAGTTACTTGGTAACTCCTCATTCTCACAACATTTCTATCAGAATTCCAATTTGGGAACTGAAACTGCATTTTGGCCACCACATGATTCCACAATAGTTACTGCACAAGTTCCTAGCTCAACTTCTGATACTAGTAACCTCTTCCCCACAACAAGTTGCTTCAACAATCCAGTAACCAGATTTGACTATATTTCTATGGGACTTTCCATTGATCATTCCAAATTCACTCCATGTACAACACAATCTGATGAACAAGATCTAGCTAACAAAAATTTGCAGGCCCGAAAAATGGAACATGAAATACTAGTTTCTGAACAAGAAGAGGATAAAACCACAAGCACAGAAAATTCAGGAAAAAGATCTAGGAGCTCAAGTGAGGTCCCAAAGAACAAGAGAAAAGTTAAATGTAGGAGGACGATTAGGTGTGCTTCTATAAACACTGAAGAGAATACAAGTCCTGGTTCTCAGGATCAGACCTTAAGCGGTTATTGTTCAGAGGATGAGTCCAATTCTTCTCATGAGCCACGTGGAAGGGAATCTTCAAGTTTGAGCCAGAATGATTCTACAGCTAAATTAAGTGGAAAATCAAGATCTAGTAGAGGTCCTGCTACTGATCCACAGAGTCTCTATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAACTTCAAATTAAGCTTCTAAGCTCTGATGACATGTGGATGTACTCTCCCATTGCTTACAATGGAATGAACATTGGACTGGAACTTGGTATTACACCCACAAAAGAAACAAAGGATATGCATAACAACATACCAATAAAAGAGAATGCAGCAGTTTAA 993 0.3877 MEPTELISQEWTSLSGLYTAEESDFMNQLLGNSSFSQHFYQNSNLGTETAFWPPHDSTIVTAQVPSSTSDTSNLFPTTSCFNNPVTRFDYISMGLSIDHSKFTPCTTQSDEQDLANKNLQARKMEHEILVSEQEEDKTTSTENSGKRSRSSSEVPKNKRKVKCRRTIRCASINTEENTSPGSQDQTLSGYCSEDESNSSHEPRGRESSSLSQNDSTAKLSGKSRSSRGPATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYSPIAYNGMNIGLELGITPTKETKDMHNNIPIKENAAV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00033 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
Mepo5g00033 330 MobiDBLite consensus disorder prediction 172 241 - -
Mepo5g00033 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 295 IPR036638 GO:0046983
Mepo5g00033 330 MobiDBLite consensus disorder prediction 203 232 - -
Mepo5g00033 330 MobiDBLite consensus disorder prediction 128 160 - -
Mepo5g00033 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 302 - -
Mepo5g00033 330 Coils Coil 116 136 - -
Mepo5g00033 330 Gene3D - 233 287 IPR036638 GO:0046983
Mepo5g00033 330 FunFam Basic helix-loop-helix transcription factor 230 287 - -
Mepo5g00033 330 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983
Mepo5g00033 330 MobiDBLite consensus disorder prediction 172 195 - -
Mepo5g00033 330 SMART finulus 235 284 IPR011598 GO:0046983
Mepo5g00033 330 MobiDBLite consensus disorder prediction 128 157 - -
Mepo5g00033 330 CDD bHLH_AtIND_like 230 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00033 Mepo-Chr5 349375 351349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00033 10 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 41.520 6.73e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g00033 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00033 - - mtr:11440124 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00033 5 349375 351349 Mepo5g00033 5 349375 351349 ECH
Mepo5g00033 5 349375 351349 Mepo4g04527 4 54988108 54989596 PCT