Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00012 ATGTTGGAGGAAGACGAGGACGTAGTGTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATTCCGAAATTGAACAAGTTTCACAACGGAAATCTCAGAATGTAGAAGCCCTAATCAAAGGTAACCTTATCGTCAAGAGACAATCGTTGCTGCCGAGAGTATATTCCACCAATGGAGCTGCCGCTATTTGCAGAAAACCGTTTAAACCACCATCTGATGCTTACGACAATCAAGATCTTGCTCGTAGGCTCTCTGCTCGCAAAAGGTTTGTTCCATGGGGTTCTACCACTCCTATTCCTATTCCTATTCCCACCTCCGCCACACCTTTGACGGAGTTGGATTTCAATATCTCTCATCTCAAAGAGGAGGTTTTGAAACCCTCGCCTCCTTTGCCCCCTGAAATTGATCCTCTAATACTCTGGCAACCTCTTCACCACTACGACCCTTCTAATTCTAATTTCACCACAATAGCTGTTGATCCTTTGCTTGTTCGTTTCCTTCGTCCACACCAGAGAGAAGGGGTTCAATTCATGTTTGATTGTGTTGCTGGACTATGTGAGACACCCGATATCAATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACACTGCAGTCCATCACATTACTATATACTCTTATTTGTCAAGGTTTCGATGGGAAGCCTATGGTTAGAAAGGCCATCATTGTCACTCCTACCAGTCTCGTTAGCAATTGGGAAGCAGAAATTAAGAAGTGGGTTGGAGATAGAGTTCGCCTTGTTGCTCTTTGTGAAACCACAAGACAAGATGTTATCTCCGGGATTAACAGTTTTACAAGTCCCCAAGGCAAATTCCAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCAGAGAAGTTTAGCTCTAGTGGCTCCTGTGATCTCCTCATCTGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGTAAACGTAGAGTTTTGCTGTCAGGAACTCCTTTGCAGAATGACTTGGAAGAATTCTTTGCAATGGTTAATTTTACTAATCCTGGAATATTGGGCGGCATTGCACATTTTCGACGTTACTTTGAGGCGCCAATAATTTGCGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGAAGGACTAATGCATTGCTATCAAATCACTTACCACCAAAGATAATTGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTTATACAGTCCAAAAATGTTAAACGGGCGATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATTACGGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATATATGATACCATACGAAGTGGGAGCCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTCTTCCCTCCAAATATGTTATCTGGAAGGTCTGGATCATGGACAGGAGGGGATGGAAGCTGGGTTGAGCTTTCCGGTAAAATGCAAGTCTTGGCGAGGTTACTTCATCAATTACGCCAGAGAACAAATGATCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAAATACCCTCACTTGAGGCTTGATGGCGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAACGACCTGTCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCCGCAGCAAGAGTGTGGAGGGACGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGGCAAAAGAAGGGCTGCAAAAGGTCATTCAGAGGGAGCAAAACGATAGCATTGCGGCACAGGGTAACTTTCTCTCGACAGAGGATCTTCGCAATTTGTTTACTTTCGATGAGAACGTCAAGTCAGAGATTCATGAAAATATGCGATGCAGTCGTTGCCAAAACAATGATGGGCCGCAAGACACTGATGTCTTGTCAACAATGATTAATAGCAAATGTGGTGATGATGAAACCGCTGATATAGGTGGATTTGCTGAGATTGCAGGCTGCTTAGGGAATTTGAAAACATCAGAAAAGCAGGTAGGGAATCCATTAGAAGAAGATTTAAGCAGTTGGGGCCATCATTTTTTCCCAACCTCTGTACCAGATGGTGTCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTGATGGAAAGCTGGTACCGGTTGACTCCATAAGTCCCAAGCTACAGAAAAAGGAATTACACAAGCCAAGCCGCAACGTCGAGCGAAAATCCACCCCTTTTACTTTACACAATAAGCTAGTGCCGCTACGTTCTGCATCCAATATTGCCAATGTGTCATGCTCATCTTCGATTGCTTGGACGAAGAAGGCAAAGAGTTGTGAAAGAATTACTCAAAATATCGCCATGAGTGTAGCATTGAACACCAAACACTCTCTTGTAAATGAATTACCAAGACAGAAAAGATCATACCCTGCTGATTCCAATGATGGCCACTCTCTTGTAAATGAAATATCACCGAAAAAAGCATGTCATGTTGACAACAATGATGAAAATTTTGAGTAA 2787 0.4259 MLEEDEDVVLSSSSSSSSSSDSEIEQVSQRKSQNVEALIKGNLIVKRQSLLPRVYSTNGAAAICRKPFKPPSDAYDNQDLARRLSARKRFVPWGSTTPIPIPIPTSATPLTELDFNISHLKEEVLKPSPPLPPEIDPLILWQPLHHYDPSNSNFTTIAVDPLLVRFLRPHQREGVQFMFDCVAGLCETPDINGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGDRVRLVALCETTRQDVISGINSFTSPQGKFQVLIVSYETFRMHSEKFSSSGSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGDGSWVELSGKMQVLARLLHQLRQRTNDRIVLVSNYTQTLDLFAQLCRERKYPHLRLDGATSISKRQKLVNCLNDLSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMAKEGLQKVIQREQNDSIAAQGNFLSTEDLRNLFTFDENVKSEIHENMRCSRCQNNDGPQDTDVLSTMINSKCGDDETADIGGFAEIAGCLGNLKTSEKQVGNPLEEDLSSWGHHFFPTSVPDGVLQASAGDEVTFVFTNQVDGKLVPVDSISPKLQKKELHKPSRNVERKSTPFTLHNKLVPLRSASNIANVSCSSSIAWTKKAKSCERITQNIAMSVALNTKHSLVNELPRQKRSYPADSNDGHSLVNEISPKKACHVDNNDENFE 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00012 928 FunFam DNA repair and recombination protein RAD54-like 514 683 - -
Mepo5g00012 928 PANTHER SNF2/RAD54 FAMILY MEMBER 37 818 - -
Mepo5g00012 928 FunFam DNA repair and recombination protein RAD54 137 407 - -
Mepo5g00012 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 408 IPR027417 -
Mepo5g00012 928 Pfam Helicase conserved C-terminal domain 526 635 IPR001650 -
Mepo5g00012 928 SMART ultradead3 163 366 IPR014001 -
Mepo5g00012 928 MobiDBLite consensus disorder prediction 8 31 - -
Mepo5g00012 928 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 686 IPR001650 -
Mepo5g00012 928 Pfam SNF2-related domain 170 476 IPR000330 GO:0005524|GO:0140658
Mepo5g00012 928 SMART helicmild6 552 636 IPR001650 -
Mepo5g00012 928 CDD SF2_C_SNF 519 647 - -
Mepo5g00012 928 Gene3D - 141 407 IPR038718 -
Mepo5g00012 928 CDD DEXHc_RAD54 167 408 - -
Mepo5g00012 928 Gene3D - 408 717 IPR027417 -
Mepo5g00012 928 Gene3D - 430 699 - -
Mepo5g00012 928 MobiDBLite consensus disorder prediction 895 928 - -
Mepo5g00012 928 MobiDBLite consensus disorder prediction 1 31 - -
Mepo5g00012 928 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 358 IPR014001 -
Mepo5g00012 928 FunFam Predicted protein 430 504 - -
Mepo5g00012 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 718 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00012 Mepo-Chr5 191069 201577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00012 193 656 RAD5 or RAD16-like Gene Family AT3G16600 24.670 3.85e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo5g00012 SNF2_N 2e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00012 K10875 - gmx:100781631 1360.51