Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo54g00029 ATGGAAAAGAAAAAAGTTACGGTACCTCTTGTTTGTCACGGTCACTCTCGTCCAGTTGTTGATCTCTTTTACAGTCCTGTTACTCCTGATGGTTTCTTTCTTATTAGCGCAAGCAAAGATGCTAGCCCTATGCTGAGGAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCATAAAGGTGCTGTTTGGAGTTGTTGTTTGGATGCTAATGCTTTGCGCGCTGCTACTGCTTCTGCTGATTTCTCAACCAAAGTTTGGGATGCATTAACAGGTGACGCATTACATTCTTTTGAGCATAAGCACATTGTCAGAGCATGTGCTTTTTCTGAGGATACCCACCTTTTGCTCACTGGGGGAGCAGAGAAAATTCTCCGAATTTATGATTTGAATCGGCCTGATGCACCTCCTAAAGAAGTGGATAAATCCCCTGGTTCAGTCAGGAGTGTTGCATGGCTTCATAGCGACCAGACTATATTGAGTTCATGTACTGATATGGGAGGCGTCAGGCTATGGGATGTAAGAACTGGTAAAATTGTCCAGACACTTGACACCAAGTCACCTATGACTAGTGCTGAAGTGAGTCAGGATGGTCGCTATATTACAACTGCTGATGGTTCTACTGTCAAGTTTTGGGATGCAAATCACTATGGATTGGTGAAGAGCTATGACATGCCTTGCAATGTGGAATCAGCTTCGTTAGAGCCCAAGTTTGGTAACAAGTTTGTTGCTGGGGGAGAAGACTTGTGGGTTCATGTTTTTGATTTCCATACAGGCGATGAGATTGCATGCAACAAAGGACATCATGGTCCTGTACACTGTGTCCGGTTCTCTCCTGGAGGAGAATCGTATGCATCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGGCCATTGGCTCATGATGAATCAGAGGGTTTATCACCAAATGGAACCCTGGAAAAGGAGAAGGCAAATGCAGAGGAGGAGGTTTCACGCAGGATTGAGGGTTTTCATATTGCAGAGGAGGCCAAGTCCAAAGGAAAGGAAGAGGCTGGGGCGGAATTATGA 1059 0.4523 MEKKKVTVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDASPMLRNGETGDWIGTFEGHKGAVWSCCLDANALRAATASADFSTKVWDALTGDALHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAPPKEVDKSPGSVRSVAWLHSDQTILSSCTDMGGVRLWDVRTGKIVQTLDTKSPMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCNVESASLEPKFGNKFVAGGEDLWVHVFDFHTGDEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLAHDESEGLSPNGTLEKEKANAEEEVSRRIEGFHIAEEAKSKGKEEAGAEL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo54g00029 352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Mepo54g00029 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Mepo54g00029 352 MobiDBLite consensus disorder prediction 303 328 - -
Mepo54g00029 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Mepo54g00029 352 FunFam Serine-threonine kinase receptor-associated protein 8 323 - -
Mepo54g00029 352 Gene3D - 9 324 IPR015943 GO:0005515
Mepo54g00029 352 Pfam WD domain, G-beta repeat 266 297 IPR001680 GO:0005515
Mepo54g00029 352 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Mepo54g00029 352 Pfam WD domain, G-beta repeat 95 130 IPR001680 GO:0005515
Mepo54g00029 352 CDD WD40 14 298 - -
Mepo54g00029 352 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 342 - -
Mepo54g00029 352 SMART WD40_4 92 130 IPR001680 GO:0005515
Mepo54g00029 352 SMART WD40_4 259 298 IPR001680 GO:0005515
Mepo54g00029 352 SMART WD40_4 177 214 IPR001680 GO:0005515
Mepo54g00029 352 SMART WD40_4 134 174 IPR001680 GO:0005515
Mepo54g00029 352 SMART WD40_4 50 89 IPR001680 GO:0005515
Mepo54g00029 352 SMART WD40_4 5 47 IPR001680 GO:0005515
Mepo54g00029 352 SMART WD40_4 217 256 IPR001680 GO:0005515
Mepo54g00029 352 SUPERFAMILY WD40 repeat-like 4 300 IPR036322 GO:0005515
Mepo54g00029 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo54g00029 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 29.448 4.21e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo54g00029 K13137 - gmx:100818422 632.484