Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g05051 ATGTATCGTCCACCTTCCTCGTCGGCTTCTTCTTCTTCCTCTTCGTCTCAGCAACAACAGAGCTCCATCAGTCAAACGGGTCTCACAAGGTATGGTTCAGCACCTAGCTCTCTCCTCAACACCACGGTGGATGCCATCATAGGAGTAGGAGGAGGATCACGCCTTCTTCCTGGAACGGGACAACATTATTTCTCTGATGACTCTACCCAGCACCAACAACAACAACAACAGCAGCAGCAGCAGCAGAGATCTTCTTACGAAGGTCAAGGTGGTGGCTTTGATGGATCGGCTTTGCTCCGTCAGAAAAGCTCTCCAGCCGGCTTTCTCAACCATCTAGCCACTCTCAATCATAATAACAATAACGCAGGGGGGTTCACAATCACGAGGGGCAATTCAAGATTGAAGTCTGAATTGAGCTTCACCGGGGGAGGGCAAGAATGTCTTTCTCGAATATCCGAAAATGTTATTGATTATGCATCAGCTGCTGGAAATGGATCATTGCATACTAACAGTACTAATACCTGGGCTGGAGGCCCTGATAATAATAACAACAACTCAAATTCCATAGTATTTTCTTCTTCCCAAACCCAAACTAATAATAATAATAATAATAGTAAGAAGCGTTCTAGTAGAACTGACACCAATGATGATCCCGACCTTCTTCTACATTGCCTCAATGCCCTCGAAACTCAGTATAGTCTCCCACAAACTTCTCTCGAAATGGACCAACTTATGCATAATATTCCTCAAGATTCCGTCCCTTGTAAAATCCGTGCCAAGCGTGGATGTGCTACTCATCCTCGTAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAGTTGCAGGACCTTGTACCTAACATGGATAAGCAAACAAGTTATTCAGACATGCTGGATTTGGCGGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGACCTTGAGAATTGCACCTGCGGATGCAAACAAAGTACATAA 1008 0.4454 MYRPPSSSASSSSSSSQQQQSSISQTGLTRYGSAPSSLLNTTVDAIIGVGGGSRLLPGTGQHYFSDDSTQHQQQQQQQQQQQRSSYEGQGGGFDGSALLRQKSSPAGFLNHLATLNHNNNNAGGFTITRGNSRLKSELSFTGGGQECLSRISENVIDYASAAGNGSLHTNSTNTWAGGPDNNNNNSNSIVFSSSQTQTNNNNNNSKKRSSRTDTNDDPDLLLHCLNALETQYSLPQTSLEMDQLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g05051 335 MobiDBLite consensus disorder prediction 170 218 - -
Mepo4g05051 335 MobiDBLite consensus disorder prediction 62 89 - -
Mepo4g05051 335 Gene3D - 264 333 IPR036638 GO:0046983
Mepo4g05051 335 SMART finulus 269 319 IPR011598 GO:0046983
Mepo4g05051 335 MobiDBLite consensus disorder prediction 57 99 - -
Mepo4g05051 335 CDD bHLH_AtbHLH_like 268 320 IPR045239 -
Mepo4g05051 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 329 - -
Mepo4g05051 335 FunFam Transcription factor bHLH130 family 264 333 - -
Mepo4g05051 335 Pfam Helix-loop-helix DNA-binding domain 268 314 IPR011598 GO:0046983
Mepo4g05051 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 327 IPR036638 GO:0046983
Mepo4g05051 335 MobiDBLite consensus disorder prediction 170 208 - -
Mepo4g05051 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Mepo4g05051 335 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g05051 Mepo-Chr4 59647864 59651604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g05051 27 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 43.716 7.71e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g05051 HLH 9.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g05051 - - mtr:11440758 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g05051 4 59647864 59651604 Mepo4g05051 4 59647864 59651604 ECH
Mepo3g02900 3 39150240 39152500 Mepo4g05051 4 59647864 59651604 ECH
Mepo4g02032 4 26801807 26805403 Mepo4g05051 4 59647864 59651604 ECH