Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g05049 ATGATCAATGTTGGTAGCAGTCCTGCTATTCCACCATTTGGTAGAAATCCAAATGTTCCACCATCCTTCCCAGACGGTTCTTCTCCACCAGTTGCTAAGACCCGGTTGTGCAACAAGTTCAATACAGCTGAAGGTTGCAAATTCGGGGATAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCCGGCCCACGGTCCCTGCATATGAAGATACTCGCGCCATGGGACAAATGCAAAGCAGCAGTGTTGGTGGGAGAATTGAGCCCCCACCTCCAGCTCATGGAGTTGCTGCCGGTTTTGGAGTCTCGGCCACTGCAAAAGTTAGTATTAATGCTACCCTTGCTGGAGCTATCATTGGAAAAAATGGTGTTAACTCCAAGCAAATGTGTCACCTAACAGGTGCTAAACTTTCCATTAGGGAACATGACTCAGATCCTAACCTTAGAAATATTGAGCTCGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTCCATGACCTTATTCTAAATGTGAGTTCGATCTCTGGACCTCCAGGAAAAAACATTACTTCACAGACTTCTGCCCCTGCAAACAACTTCAAGACCAAGCTGTGTGAAAACTTTACCAAAGGATCCTGCACTTTTGGGGAAAGGTGCCACTTCGCGCATGGAACAGATGAATTACGCAAGCCTGGAATCTGA 690 0.4696 MINVGSSPAIPPFGRNPNVPPSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPAHGVAAGFGVSATAKVSINATLAGAIIGKNGVNSKQMCHLTGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSISGPPGKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELRKPGI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g05049 229 Gene3D - 26 63 - -
Mepo4g05049 229 Gene3D - 192 226 - -
Mepo4g05049 229 ProSiteProfiles Type-1 KH domain profile. 103 167 - -
Mepo4g05049 229 MobiDBLite consensus disorder prediction 13 27 - -
Mepo4g05049 229 SUPERFAMILY CCCH zinc finger 195 225 IPR036855 GO:0046872
Mepo4g05049 229 PANTHER CCCH ZINC FINGER/TIS11-RELATED 179 227 IPR045877 GO:0003729
Mepo4g05049 229 SMART kh_6 102 172 IPR004087 GO:0003676
Mepo4g05049 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Mepo4g05049 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 196 220 IPR000571 GO:0046872
Mepo4g05049 229 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 101 175 IPR036612 GO:0003723
Mepo4g05049 229 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Mepo4g05049 229 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Mepo4g05049 229 SMART c3hfinal6 33 58 IPR000571 GO:0046872
Mepo4g05049 229 Gene3D K Homology domain, type 1 97 191 IPR036612 GO:0003723
Mepo4g05049 229 SUPERFAMILY CCCH zinc finger 29 62 IPR036855 GO:0046872
Mepo4g05049 229 FunFam Zinc finger CCCH domain-containing protein 190 226 - -
Mepo4g05049 229 Pfam KH domain 106 168 IPR004088 GO:0003723
Mepo4g05049 229 CDD KH-I_AtC3H36_like 106 171 - -
Mepo4g05049 229 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Mepo4g05049 229 FunFam Zinc finger CCCH domain-containing protein 26 63 - -
Mepo4g05049 229 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g05049 Mepo-Chr4 59602017 59604386 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo4g05049 KH_1 8.1e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g05049 - - mtr:11446765 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g05049 4 59602017 59604386 Mepo4g05049 4 59602017 59604386 ECH