Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g05047 ATGATTTCAAATTCGAGGATAAATGGAAGCAGCTATGAAACTTCTCAATCTACTAATATAAATTATGGTGCAAAACGTACGAGGTATGAAGTAGAGGATGTTGCAGGGTGTCAAAAGTTCAAAGGGGTTGTGCCTCAACAAAATGGACATTGGGGTGCACAAATATATGCAAATCACCAAAGAATATGGTTAGGGACATTCAAATCTGAAAGAGATGCTGCCATGGCTTACGACAGCGCCACCATTAAGCTCAGAAGCGGAGAAAGCCATAGAAACTTTGCATGGAATAACCAAACAGTTCAAGAACCTATGTTTCAAAGTCAATATAGCATGGAAACAATTATGATCATGATTAGAAATGGCACATACCCCTCTAATTTTGCAACATTTGTTAGAAATAATCAAAGCCAAGGTGCAGGCAAAGAAGGTGCTATTATTGGGGTGAAGGGTAAGGAACAATTTTCTTGCACACAACTTTTTCAAAAAGAATTAACACCAAGTGATGTTGGTAAACTCAACAGGCTTGTCGTCCCGAAAAAACATGCAGTTACCTATTTTCCTTTGGTTTGTGGCAATATATGTAATGACGTGGAAGTTGTGTTTTATGACAAACTCATGCGATTGTGGAAGTTTCGATATTGCTATTGGAAGAGCAGCCAAAGCTATGTGTTCACTAGAGGATGGAATCGGTTTGTGAAGGATAAGAAATTGAAGGCCAAAGACACCATTGTATTTTATAGGTGTGAACCTATAAATTTGACAAATAGTAAGGGAGAGAGACGACCGTTTTCATTAATTGATGTAATCTACAATGATATTGATGGTAATAAGAAAACAAATTCTTTTGAAGATGAGGAGGATGGAGATGCCAGGTTAGTTTGCAATGAAGTGGATGATGATAAAGATACTAGAATAGATTTGAATGAGTTTCAATATTCCACATATAATAATAATAATAATAATGCACATGGAGGCTTAAGGCTCTTTGGCGTAAGTATCAGCTGA 1005 0.3682 MISNSRINGSSYETSQSTNINYGAKRTRYEVEDVAGCQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSERDAAMAYDSATIKLRSGESHRNFAWNNQTVQEPMFQSQYSMETIMIMIRNGTYPSNFATFVRNNQSQGAGKEGAIIGVKGKEQFSCTQLFQKELTPSDVGKLNRLVVPKKHAVTYFPLVCGNICNDVEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYRCEPINLTNSKGERRPFSLIDVIYNDIDGNKKTNSFEDEEDGDARLVCNEVDDDKDTRIDLNEFQYSTYNNNNNNAHGGLRLFGVSIS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g05047 334 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Mepo4g05047 334 Gene3D - 155 261 IPR015300 -
Mepo4g05047 334 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Mepo4g05047 334 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 333 IPR044800 GO:0003700
Mepo4g05047 334 SMART B3_2 160 259 IPR003340 GO:0003677
Mepo4g05047 334 SUPERFAMILY DNA-binding pseudobarrel domain 158 250 IPR015300 -
Mepo4g05047 334 CDD B3_DNA 159 247 IPR003340 GO:0003677
Mepo4g05047 334 SMART rav1_2 39 100 IPR001471 GO:0003700|GO:0006355
Mepo4g05047 334 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Mepo4g05047 334 ProSiteProfiles AP2/ERF domain profile. 39 94 IPR001471 GO:0003700|GO:0006355
Mepo4g05047 334 FunFam AP2 domain-containing protein RAP2.8 38 95 - -
Mepo4g05047 334 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Mepo4g05047 334 Pfam B3 DNA binding domain 160 247 IPR003340 GO:0003677
Mepo4g05047 334 ProSiteProfiles B3 DNA-binding domain profile. 160 269 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g05047 Mepo-Chr4 59595953 59596957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g05047 34 286 RAV Transcription Factor Family AT1G51120 53.571 5.95e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g05047 B3 1.1e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g05047 K09287 - gmx:102660503 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g05047 4 59595953 59596957 Mepo4g05047 4 59595953 59596957 ECH