Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g05018 ATGGCATCAACATCTTGTTTTAGTAAGAGTCCATTACCCATGAAAGAGACAGCTTTGAGCCATGCTGAATATCCTCCACCTATGGCAACTTATGAGGAGGTTGTAGACAATCCCAAGCTCTTCATACTTAGCTTGGAGAAGCTCCACACTCTAATGGGCACCAAGTTCATGATTCCTGTTATTGGGGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGTTTGAAAAGATCATTAAAGATAGAAAATGGAAAGAAGTAACTTTAGTTTTCAATTTTCCATCAACGGCTACAAATGCTTCTTTTGTGCTTCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTAACTGGACCAATACAACTTCCGATATTTTGCAGAGTCAATCATCCATCCCAGCTCCTGTTCCAAAGATGCAGTTTTCGCATCCTTCACCCCAAGTTCAACCAGCTGTCTTTCAACAGTTAAAAGTTAATTCTGCACCACCTGAAGCAATGGGATCATCTTCGGCAGGATCTCAGGTTGTCGGGGTCATTGATGGGAAATTTGATAGTGGTTATCTAGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGCGTACTTTATCAAGCTCCACAAAATCCTGTGCTGCCAGCATCCCACCATAGTGTTCCTGCTAATAACAACAACGTGACCGCCTCTGTTGGTGTCCATCGTCGCCGACGCAGGAAGAAATCAGAGATGAAAAAGAGAGATCCTGCTCACCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAGCATCCAAGGCTAAAACCTCTTCACCGAGGGAAGGACCGAGAGATTAGTAGGACCATTGGTGAACTCTGGAACAAGTTACCTGAATCAGAAAAAGCAGTTTATCAAGATAAAGCCGTGAAGGACAAAGAGAGGTACATAACAGAAATGGAGTATTACCGTGAGAAGCTGAAGAATGATCAAGTCATCAGTGATGCTGTGCCACTTCGACAGCGACTTCCTGAACCAGATACTGACATGTTGAATGCTGAGGCAGACTCTCTTCAAACTCCAGAGCAGAGTAGTTCGGACGGAAGTGACGACTATGAAGATGATAAGGCGAAGGAGAAGGATTTTAGTGTGGATTCATTGCCTGTTATAGGATTAGGAGTTGGTGCTGAATCTATGGATTCAGTAGAGAGATCATCCAAGGGGGGTTTATGA 1254 0.4282 MASTSCFSKSPLPMKETALSHAEYPPPMATYEEVVDNPKLFILSLEKLHTLMGTKFMIPVIGGRELDLHRLFVEVTSRGGFEKIIKDRKWKEVTLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKARNWTNTTSDILQSQSSIPAPVPKMQFSHPSPQVQPAVFQQLKVNSAPPEAMGSSSAGSQVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSVPANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHPRLKPLHRGKDREISRTIGELWNKLPESEKAVYQDKAVKDKERYITEMEYYREKLKNDQVISDAVPLRQRLPEPDTDMLNAEADSLQTPEQSSSDGSDDYEDDKAKEKDFSVDSLPVIGLGVGAESMDSVERSSKGGL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g05018 417 SMART ARID_2 32 122 - -
Mepo4g05018 417 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 264 331 IPR009071 -
Mepo4g05018 417 FunFam High mobility group B protein 15 246 341 - -
Mepo4g05018 417 SUPERFAMILY HMG-box 252 336 IPR036910 -
Mepo4g05018 417 MobiDBLite consensus disorder prediction 359 390 - -
Mepo4g05018 417 CDD HMG-box_AtHMGB9-like 264 330 - -
Mepo4g05018 417 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Mepo4g05018 417 Gene3D - 28 142 IPR036431 GO:0003677
Mepo4g05018 417 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 382 - -
Mepo4g05018 417 FunFam High mobility group B protein 15 29 143 - -
Mepo4g05018 417 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Mepo4g05018 417 MobiDBLite consensus disorder prediction 227 272 - -
Mepo4g05018 417 Pfam HMG (high mobility group) box 264 331 IPR009071 -
Mepo4g05018 417 MobiDBLite consensus disorder prediction 244 258 - -
Mepo4g05018 417 Gene3D High mobility group box domain 248 343 IPR036910 -
Mepo4g05018 417 SMART bright_3 36 127 IPR001606 GO:0003677
Mepo4g05018 417 SMART hmgende2 263 332 IPR009071 -
Mepo4g05018 417 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Mepo4g05018 417 MobiDBLite consensus disorder prediction 227 243 - -
Mepo4g05018 417 SUPERFAMILY ARID-like 33 132 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g05018 Mepo-Chr4 59321970 59327058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g05018 1 363 ARID Transcription Factor Family AT1G04880 61.230 1.07e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo4g05018 ARID 6.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g05018 - - gmx:100807028 592.423