Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g05004 ATGGAGTTCGAGACAACTAAGGGTGTGAATGCGATTCAGAGCTTCGATGAGATCGGAATCAAAGACGATTTACTGCGTGGAATTTACCAACACGGTTTTGAGAAACCTTCATCCATTCAACAGCGTGCCGTTCTACCTATCATTCAGGGTCGTGACGTCATCGCTCAATCTCAATCTGGAACCGGCAAGTCCTCCATGATTTCTCTCACTGTTTGCCAGGTTGTTGATACCTCCTTTACTGACTTAAATTTTGTAATTTTGAACAGGTTACAGGCTTTAATTGTATCTCCGACAAGGGAATTAGCCTCACAGACTGAAAATGTTATTTTGGCAATTGGAAGTTTCATTAATATACGAGCACATGCATGCATTGGAGGCAAAAGTGTTGGAGAAGACACAAGGAAACTTGAACACGGAGTTCATGCAGTGTCTGGGACTCCTGGCCGAGTCCTTGACATGATCAAGAGGAGAACATTGTGCACAAGAGCTATCAAGTTGCTTGTGCAGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACAGGATCTTCAGGTTTGCTTGATTTCTGCTACGCTACCTCATGAAATTTTGGAGATGACAGATAAGTTTATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAGACAATATTATGTTGATGTTGAAAGGGAGGAATGGAAATTTGATACTCTTTGTGATCTTTATGATCAGTTGACCATCACTCAAGCTGTTATATTCTGTAACACCAAGCGAAAGGTAAATGGAAATTATAAAGTTATTAATTATGATCTTCCAAATAATCGAGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGACGAAAGGGTGTAGCTATAAATTTTGTGAAAAGCGATGATATCAAGATCTTAAGAGATATTGAGCAATATTACAGTATTCAGATTCTTGATCTGCAAATGAATGTTGCTGATCTTATATAA 1026 0.3938 MEFETTKGVNAIQSFDEIGIKDDLLRGIYQHGFEKPSSIQQRAVLPIIQGRDVIAQSQSGTGKSSMISLTVCQVVDTSFTDLNFVILNRLQALIVSPTRELASQTENVILAIGSFINIRAHACIGGKSVGEDTRKLEHGVHAVSGTPGRVLDMIKRRTLCTRAIKLLVQDESDEMLSRGFKDQIYDVYRYLPQDLQVCLISATLPHEILEMTDKFMTDPVRILVKRDELTLEGIRQYYVDVEREEWKFDTLCDLYDQLTITQAVIFCNTKRKVNGNYKVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSIQILDLQMNVADLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g05004 341 Gene3D - 226 278 IPR027417 -
Mepo4g05004 341 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 13 41 IPR014014 GO:0003724
Mepo4g05004 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 224 IPR027417 -
Mepo4g05004 341 SMART ultradead3 32 237 IPR014001 -
Mepo4g05004 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 337 IPR027417 -
Mepo4g05004 341 Gene3D - 279 339 IPR027417 -
Mepo4g05004 341 Gene3D - 1 225 IPR027417 -
Mepo4g05004 341 FunFam ATP-dependent RNA helicase DBP5 1 227 - -
Mepo4g05004 341 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 279 322 - -
Mepo4g05004 341 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 183 341 IPR001650 -
Mepo4g05004 341 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 222 IPR014001 -
Mepo4g05004 341 Pfam DEAD/DEAH box helicase 38 208 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g05004 Mepo-Chr4 59220819 59224487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g05004 3 341 Eukaryotic Initiation Factors Gene Family AT3G19760 68.878 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g05004 K13025 - gmx:100795032 543.502