Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04960 ATGTTCACAAGAAGAAAATTTCTCAATATACTTTCATCACACAATGTTTCTAAGCTAATTTCTCACCAATTATATCCAAATCCCCAAATTTCAAACAATTGTAGGGTTTTACTTTTCAATCTCTATGGAACCACCCAAGATTCCAAATTTCCCGAATACGAGATGCCTACTGTTACATGGGGTGTGATTCAAGGCCGCAAAGAGAAACTCGTTTCACGGGTTATCATCTTCGATTATCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGAAGTCATGAGGGAACGTGTTGAGTTTATTCAGAAATTAGGGTTAACGGTTGATGATATAAATCAGTATCCTTTGATTTTGGGTTGTAGTGTTAGAAAAAACATGATTCCTGTTTTAGGGTATTTAGAAAAAATTGGGATTTCTAGGTCTAAACTTGGTGAATTTATTAAGAATTATCCACAGGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTCCTTAGAGGGCTTGATGTGGAGAAAGATGATATTGGGTTTGTGTTGCAAAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGTACTATGAGTACTTCAGTGGCTTATCTTGTTAGTATTGGTGTTAGTCCTAGGGATATTGGTCCCATGGTTACTCAGTATCCTTATTTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTCTTGTTGATTACTTGGTTAATTTACGGTTGCCTAGGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATTTACTTGGTTATGATCTTGAAGAGACTGTGAAACCTAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTTTGCCTTCGGTTATTGCTCAGTATCCGCAGATTATTGGGTTGCCTCTTAAGGCAAAATTGTCTTTGCAACAATATTTTTTCAGTTTGAAGCTCAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCATCAAAATGTGATTATGAAACCGGTTGAGTTTTTACTTGGTAGGGCAATACCATCGCAGGATGTGGCTAGTATGGTGATTAAGTGTCCTCAATTGGTTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTATTACTTCTTCAAAAGTGAGATGGGGAGACCTGTAAAAGAGCTTGTGGAGTTTCCAGAATACTTCACTTATAGTTTGGAATCTAGGATTAAACCTAGATACCAGAGGCTTAAGAGCAAGGGGATAAAGTGTTCATTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAGGAGAGATTGCAGGGCAATTATATCGAAACCGAAAGTATAGGTCCTTCATTCTGTATTGGTGGGAAATTAGAGCTACCCGGGAATGACATAGTTTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACTGTTTCTCTTTAG 1491 0.3843 MFTRRKFLNILSSHNVSKLISHQLYPNPQISNNCRVLLFNLYGTTQDSKFPEYEMPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFIQKLGLTVDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLRLPRKILARMLEKRAYLLGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSLQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRVELMKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFCIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04960 496 PANTHER CGI-12 PROTEIN-RELATED 137 450 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 FunFam Transcription termination factor MTERF4, chloroplastic 240 454 - -
Mepo4g04960 496 Pfam mTERF 138 446 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 FunFam Transcription termination factor mterf4, chloroplastic 102 239 - -
Mepo4g04960 496 Gene3D Transcription termination factor 3, mitochondrial 103 243 IPR038538 -
Mepo4g04960 496 Gene3D Transcription termination factor 3, mitochondrial 244 456 IPR038538 -
Mepo4g04960 496 SMART mt_12 296 328 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 SMART mt_12 368 399 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 SMART mt_12 116 147 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 SMART mt_12 188 219 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 SMART mt_12 400 431 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 SMART mt_12 333 363 IPR003690 GO:0003690|GO:0006355
Mepo4g04960 496 SMART mt_12 152 183 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04960 Mepo-Chr4 58839720 58841516 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Mepo4g04960 mTERF 8.9e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04960 K15032 - gmx:100809590 827.009