Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04954 ATGGTTCTATCAAACAAAAAGCTTAAACAGAAGCTTAGAGCTGAATTAACCCTAAACCAGATTAACGCTGAATCTAATCCACCTTCTTCATCATCTTCAAACTCTCTTAAACTTCTTTTTAACTCTTCCACCAACAAACCCATTTTGTCTAAGAGAGAGAAACTCCGAAAGCTTCGACCTTTGCAACAAACTCAATCCAATGAAGATGAAGGAACCAAAAACGAGGAAATTGGGAATGAGGGTTTAGGAAAGAAGAAGAACAAAAAGAGGAAAATGAAGGTAGAAGAGAAAGAAGATGAATCAATTGAAAAGAAGGAGAAGCAAATGAAGAAGAAGAAGAAGAATGAAGATGGTGTGGCTAATGGGGTTGTGAAGAAGAGTAATGATGATGTGGCTAATGTGGTTATGAAGAAGAATGATGAAGATGTGGCTAATGGGGTTGTTGTTAAGGATGCAAAAAAATCAATGAAAAAGGAGAAGCAAAAGAAAAAGAATCAATTGAAGAAGAAGAGAAAGAAGAACAAAACTGCAGAGGAAAATGGTGAGGCCAAAATTGCAGAGGAGAGTGTTTCTAATCATCAAGAGGAAATGCCACAATCTACAGGATTGGCTAACACTAATACCACTACAAGTCAAGAAAATGGTGATGTTGCTACAAAAGTTTATGTTGGAGGAATACCCTACTATTCAAGTGAGGATGACATTCGAAGTTATTTTGAAGGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGCAAGTTTAGAGGGATTGCAATAATTAGTTTTAAGACTGAAGCAGCGGCCAAACGAGCATTGGCTCTTGATGGATCTGACATGGGAGGACTCTTTCTTAAAATTCAACCATGCAAAGCAACTCAAGCAACCCGATTTACTCCAGAAATGAAGGAGGGATATAATAGAATATATGTTGGAAGTTTGTCATGGGAAATAACAGAGGAAGAACTAAGGAAATTCTTCTCAAATTGCAATGTAAAGGCCATACGACTTGGTATGGACAAGGAAACAGGAGAATTTCGAGGGTATGCTCACGTTGATTTCGGTGATAGTCAGTCACTGAAGACAGCACTTGCATTGGACCAAAGTGTCTTGTTTGGAAGGCCTGTCAGGATAAGTTGTGCGGTTCCTTTGAACAAAAAACCAGTTGCAGGTTCCAAACCAGTTGCAGGTTCTAAACCAGGTGCAGGTGAAAAATCAGTTGCAGTTGAAAAACCAGGTGCAGGTGAAAAATCAATTGCAGTTGAAAAACCAGGTGCAGGTGAAAAATCAGTTGCAGTTGAAAAATCAGGTGCTGGTGAAAAATCATTTGCAGGTGAGCAACCAGGTGCAGGCGGAAAACTAACTGTTGAGCAACCAAGTTCTGTTGCAAGTGGCAAGAGGAAGAATAGGATGTGCTACGGCTGTCGTCAAAAAGGACATAATCTCTCAGAATGCCCAAACCCACAAATAGTTGCTTCTGCTGCACTTTGA 1503 0.3972 MVLSNKKLKQKLRAELTLNQINAESNPPSSSSSNSLKLLFNSSTNKPILSKREKLRKLRPLQQTQSNEDEGTKNEEIGNEGLGKKKNKKRKMKVEEKEDESIEKKEKQMKKKKKNEDGVANGVVKKSNDDVANVVMKKNDEDVANGVVVKDAKKSMKKEKQKKKNQLKKKRKKNKTAEENGEAKIAEESVSNHQEEMPQSTGLANTNTTTSQENGDVATKVYVGGIPYYSSEDDIRSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALALDGSDMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNCNVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALDQSVLFGRPVRISCAVPLNKKPVAGSKPVAGSKPGAGEKSVAVEKPGAGEKSIAVEKPGAGEKSVAVEKSGAGEKSFAGEQPGAGGKLTVEQPSSVASGKRKNRMCYGCRQKGHNLSECPNPQIVASAAL 500
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04954 500 MobiDBLite consensus disorder prediction 192 212 - -
Mepo4g04954 500 MobiDBLite consensus disorder prediction 393 472 - -
Mepo4g04954 500 SUPERFAMILY Retrovirus zinc finger-like domains 468 492 IPR036875 GO:0003676|GO:0008270
Mepo4g04954 500 MobiDBLite consensus disorder prediction 92 120 - -
Mepo4g04954 500 MobiDBLite consensus disorder prediction 156 171 - -
Mepo4g04954 500 Coils Coil 85 115 - -
Mepo4g04954 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 387 IPR000504 GO:0003723
Mepo4g04954 500 MobiDBLite consensus disorder prediction 69 83 - -
Mepo4g04954 500 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 97 295 - -
Mepo4g04954 500 MobiDBLite consensus disorder prediction 146 212 - -
Mepo4g04954 500 Gene3D - 137 300 IPR012677 -
Mepo4g04954 500 Gene3D - 301 392 IPR012677 -
Mepo4g04954 500 Coils Coil 149 180 - -
Mepo4g04954 500 MobiDBLite consensus disorder prediction 172 191 - -
Mepo4g04954 500 MobiDBLite consensus disorder prediction 44 132 - -
Mepo4g04954 500 MobiDBLite consensus disorder prediction 19 38 - -
Mepo4g04954 500 CDD RRM1_PHIP1 221 292 IPR034361 -
Mepo4g04954 500 SMART rrm1_1 312 383 IPR000504 GO:0003723
Mepo4g04954 500 SMART rrm1_1 220 292 IPR000504 GO:0003723
Mepo4g04954 500 SUPERFAMILY RNA-binding domain, RBD 304 401 IPR035979 GO:0003676
Mepo4g04954 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Mepo4g04954 500 ProSiteProfiles Zinc finger CCHC-type profile. 476 491 IPR001878 GO:0003676|GO:0008270
Mepo4g04954 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 287 IPR000504 GO:0003723
Mepo4g04954 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 380 IPR000504 GO:0003723
Mepo4g04954 500 SUPERFAMILY RNA-binding domain, RBD 202 300 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mepo4g04954 Mepo-Chr4 58806607 58809842 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04954 219 385 Eukaryotic Initiation Factors Gene Family AT2G36660 26.923 2.06e-06 48.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04954 - - mtr:25485710 751.125
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04954 4 58806607 58809842 Mepo4g04954 4 58806607 58809842 ECH