Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04943 ATGGGTCGTGCAAAAATAACTATGAAATACATCAAAGATAAGAAAAATCGCAAAAGTACTTTCAAGCAAAGAAAAAATGGATTCATAAAGAAAATTTCCCAATTCACTATCAAGACCGGAGCAAAAGCTTGCTTGATTGTGTATGATGATGATGATGATGATGGTGGTAATAATGCGGGACCAATAACATGGCCAGAAGACCATACAATTGTAAACTCTACGCTTCAAGAGTATGTGCATCAAGAGATTGAGAAAACACCCAAGATATTTGATGTCAACGACTACTTTGAAAATAAGAAAAAAATGGTTAAAACTGAGATTACCAAAGTGCATAAAGCTATCATCGATATCAAATATCCAACTTGGCATCCAGATTTAATTAACATGGAAGAGGGCGAACTCAAAGACCTCATTGCCATTGTAAATGCAAAGGTAGATGCTTGTAATCTCAAAATTAACATGTTGAAAAGTGAGATGGTGAAAGAGAATGTTGTTTTGAATCCAACCCCACTCAGTGTCATGCATAACATCCCTCAGATACAACAGCACAACAATGATATTAGCGAGATGATGGATATGACTAATGATGTTGGTTTGCCTCATAATTCATCAACAGATCAACTTGATTTAAACACATGA 639 0.3521 MGRAKITMKYIKDKKNRKSTFKQRKNGFIKKISQFTIKTGAKACLIVYDDDDDDGGNNAGPITWPEDHTIVNSTLQEYVHQEIEKTPKIFDVNDYFENKKKMVKTEITKVHKAIIDIKYPTWHPDLINMEEGELKDLIAIVNAKVDACNLKINMLKSEMVKENVVLNPTPLSVMHNIPQIQQHNNDISEMMDMTNDVGLPHNSSTDQLDLNT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04943 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mepo4g04943 212 CDD MADS_SRF_like 2 103 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo4g04943 212 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Mepo4g04943 212 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Mepo4g04943 212 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Mepo4g04943 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g04943 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g04943 212 PANTHER MADS BOX PROTEIN 3 129 - -
Mepo4g04943 212 SMART madsneu2 1 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04943 Mepo-Chr4 58708819 58710690 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04943 1 143 Type I MADS-box Gene Family AT5G55690 32.886 1.65e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g04943 SRF-TF 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04943 - - mtr:25493777 201.445