Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04934 ATGGCAACGAAAGGTACCAAAAGGGTTGATGCCGTCGATTCTCGCTCTGCTTCCGTTCTCGTTCGTGCCAAAGATGGCAGTGCTTTCGCTAAATGTGATGAGTGTAAGAAAGATGTTCCTGTTGCACTGATTGACATGCACAATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTCGAATCTCATGCTGTTGAGCAAGCTGCTGAAGTGAAGAAACTTGAGAGGAAGAAGCCAAATTCAAAAGAACCAAATGCCAAAAGGGCTAAAGTTGGGAAAGGGAAAAAGGTTAAGGATCCTAATGCTCCTAAGCGTCCTCCAACCGCTTTCTTTGTTTTCATGGATGAGTTTAGAAAGATTTTTAAGGAAGCTAACCCTGATTCGAAAGATGTTAAGAGGGTTGGTAAGGAAGCTGGTGAGAAGTGGAGGTCTTTGACTGAGGAAGAGAAGAAGCCTTATTTGGATAAGGTTGTTGAACTCAAGGCAGAATATGAGAAGGCCATGGAATTGTATAATGCTGCTACTGCTGAAAGTGAAGATCAAGAGGGATCTGATAAGGAAGATAAGGAAGGCCAGTCTGATGATAAGGAAGCTGCTGCTGCAGGAGAGGTGGAGGAGTTAACTGATGAAGAGTAG 633 0.4329 MATKGTKRVDAVDSRSASVLVRAKDGSAFAKCDECKKDVPVALIDMHNCSLEAKIKMNLESHAVEQAAEVKKLERKKPNSKEPNAKRAKVGKGKKVKDPNAPKRPPTAFFVFMDEFRKIFKEANPDSKDVKRVGKEAGEKWRSLTEEEKKPYLDKVVELKAEYEKAMELYNAATAESEDQEGSDKEDKEGQSDDKEAAAAGEVEELTDEE 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04934 210 CDD HMG-box_AtHMGB1-like 103 163 - -
Mepo4g04934 210 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Mepo4g04934 210 SMART hmgende2 101 172 IPR009071 -
Mepo4g04934 210 Gene3D High mobility group box domain 85 187 IPR036910 -
Mepo4g04934 210 MobiDBLite consensus disorder prediction 127 147 - -
Mepo4g04934 210 MobiDBLite consensus disorder prediction 178 202 - -
Mepo4g04934 210 Coils Coil 56 76 - -
Mepo4g04934 210 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Mepo4g04934 210 MobiDBLite consensus disorder prediction 69 106 - -
Mepo4g04934 210 MobiDBLite consensus disorder prediction 69 101 - -
Mepo4g04934 210 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 7 193 - -
Mepo4g04934 210 MobiDBLite consensus disorder prediction 170 210 - -
Mepo4g04934 210 SUPERFAMILY HMG-box 89 171 IPR036910 -
Mepo4g04934 210 Coils Coil 156 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04934 Mepo-Chr4 58604508 58606146 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mepo4g04934 HMG_box 1.2e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04934 K25507 - gmx:100306558 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04934 4 58604508 58606146 Mepo4g04934 4 58604508 58606146 ECH