Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04933 ATGCTTGATAATGTGGACAACATTATCGACTCAACTTGGAGACTATGTGCTCTTGTAGGTGGTTGGGTTTCTGGTTTAATTTCAAAACCTTACACAAAAGTGGTTGGCTCTGCATTTGATGGTTCTATTTCTAGGTTGGCCAACGAAAGGGAAAATCGTTATCTAGATTACATGGATCAGTGTATATATATTAGTTCGTCGGATGATGAGTTGGAGGAAATTGTAGATCCTAGGAGGATTCCCCCAATATGGGCCGCTTCTGAAAGGAATTCAGATTCAAGAAGGGTAAAAAGTTCAAACGCGAGCTCGTCTAACGTTTTTAATCATTCACAAGTTAAGCCCAATAATCAACCTGGTCCGAGCAATGGAAGCACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATTCCAATGGTGCCGGTTATGAGAAAATGTCATCTCAACAAGCTTTCAACAGGACCCTTCCACCATCTTTTCAATCATCTGCCTCAAGGGCTCTTCCACCTTCGTCATTTGCACCCAATAACAGATTAAGTAACTTAAGCAACAGTCAGCTGCATGATGCATACAAGAGTCGTCACCATGGAGTAGGACCTAGCTCATCCGGTGAGAAGGGCTTTTTTCGTGACGGCAGAGGCAATGATGGAGATCGTTTCACGAATCAGAATGGTGGGACAAGGGCTCTTCCTCCATCTTTGATGCTTGGAAAGGCTATAACTCCACCATTTGCTGGTTCTAGTGAATCTGCATACCGTTCTGGAGCAGGTGATGAAAGGGCTCCTGAAACTGATGAGAGACTAATTTATGAAGCAGCATTACAGGATATCAGTCAACCATTAAAAGAAGCTGATTTACCTGCTGGTATAATGTCTGTACCTCTAATGAGACATCAGAAAATTGCACTAGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAAACAATTTCAACGATTGCTCTCATCCTAATGCAAAGGCAATCACAGATAAAATGGAAAACAGATGATCCACGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGAGAATGGCAGTATTGATGTGGAAAAGGAAAAGCTTAAAAATGATGAAGAATCCAATGATGCAAAACCTATTACTGAACCGAGTAGTTCAACACAGGCCCCAGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAGCTTGATGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTGATTTTTCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAACAACCTTTAGTCGAGGAGGATGATATTGATGAAAAAGACGGGGAAAAGTTTGGCTTATCCTCCGATTTTTCTGTCAATAAAAAGAGGAAAAAGCTATATAATGGAAGTAAGAAGGGTAAAAAAGGTAGGAAGGGATTAGACGGCTCTTCTTTCGATTGCGGTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGAACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCAAAAAGAAGGTGGTGCTTATCTGGCACGCCTATTCAGAATACCATTGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCCTTCTACAATACAATAAAAGTCCCAATATCCAGAAATTCTATTCACGGTTACAAAAAACTTCAAGTAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCTATAATCACTTTACCACCTAAAACAATTAATCTGGAGAAGGTGGATTTCTCCTATGAGGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCAGCTGCTGGCACAGTAAATCAAAACTACGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCGCTTCTTGTTAAAGAATATAATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAGCTTCCAAAGGAGATGCTGATCAATCTGTTTAATAGTCTGGAAACAACTTCCGCCATATGCTGTGTCTGCAATGATCCACCTGATGACTCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAATGCGTGTCAGAACATTTGACAAGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAACTTGGGGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCCTCTCTGACGATCTTGGTGGTAGTAGTTCTAGCAACTCGAGTCTTGTTGATTATTCCCTAGTACAGAACAGTGAGTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAGTTGTAAATTGAAGACTCCTGGCTTACTGAATTCCCCCGAAGGCAATAGAGATTCACTGCCTTCTGATGATTCCGATATTGAAGATTTTGATTCAGATGTCAAGGTTACAAAACACACAAGAAAATATTCAGAGTGCACATCTGGAGGACCACTAAAGGCTATAATTTTTTCTCAGTGGACTAGCATGTTGGACTTGGTCGAGACATCAATGGAGCAATCTGGCGTCAAATACAGGAGACTTGATGGTAGGATGACTCTTAGTGCGAGGGACAGAGCTGTTAAGGATTTCAATACTGATCCTGAGATTACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTAAATATGGTTGCAGCATGTCATGTTATTCTTTTGGACCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGATCACCATAAAAGATACAGTTGAAGATAGAATATTGGCTCTACAGGAGGAAAAGAGAAAAATGGTGGCATCTGCATTTGGCGAAGACCATGCTGGCGGTTCTGGAACTCGGCTTACTGTTGATGATCTGAAATATCTTTTCATGGTTTAG 3138 0.4152 MLDNVDNIIDSTWRLCALVGGWVSGLISKPYTKVVGSAFDGSISRLANERENRYLDYMDQCIYISSSDDELEEIVDPRRIPPIWAASERNSDSRRVKSSNASSSNVFNHSQVKPNNQPGPSNGSTSQHQTVNSRISNSNGAGYEKMSSQQAFNRTLPPSFQSSASRALPPSSFAPNNRLSNLSNSQLHDAYKSRHHGVGPSSSGEKGFFRDGRGNDGDRFTNQNGGTRALPPSLMLGKAITPPFAGSSESAYRSGAGDERAPETDERLIYEAALQDISQPLKEADLPAGIMSVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQIKWKTDDPRNHKAEALNLDDDDENGSIDVEKEKLKNDEESNDAKPITEPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLVEEDDIDEKDGEKFGLSSDFSVNKKRKKLYNGSKKGKKGRKGLDGSSFDCGGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIHGYKKLQVVLRAIMLRRTKGTLLDGKPIITLPPKTINLEKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKKLPKEMLINLFNSLETTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTSDDNMCPAVHCKEQLGEDLVFSKATLRSCLSDDLGGSSSSNSSLVDYSLVQNSEYSSSKIKAVLEVLQSSCKLKTPGLLNSPEGNRDSLPSDDSDIEDFDSDVKVTKHTRKYSECTSGGPLKAIIFSQWTSMLDLVETSMEQSGVKYRRLDGRMTLSARDRAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04933 1045 SUPERFAMILY RING/U-box 739 791 - -
Mepo4g04933 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 1044 IPR027417 -
Mepo4g04933 1045 Gene3D - 799 1044 IPR027417 -
Mepo4g04933 1045 MobiDBLite consensus disorder prediction 375 407 - -
Mepo4g04933 1045 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 506 637 - -
Mepo4g04933 1045 Pfam SNF2-related domain 298 702 IPR000330 GO:0005524|GO:0140658
Mepo4g04933 1045 CDD SF2_C_SNF 892 996 - -
Mepo4g04933 1045 CDD DEXDc_SHPRH-like 295 625 - -
Mepo4g04933 1045 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 90 1044 - -
Mepo4g04933 1045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 310 587 IPR014001 -
Mepo4g04933 1045 MobiDBLite consensus disorder prediction 96 188 - -
Mepo4g04933 1045 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 390 477 - -
Mepo4g04933 1045 MobiDBLite consensus disorder prediction 86 235 - -
Mepo4g04933 1045 Pfam Zinc finger, C3HC4 type (RING finger) 741 777 IPR018957 GO:0046872
Mepo4g04933 1045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 877 1040 IPR001650 -
Mepo4g04933 1045 SMART helicmild6 904 987 IPR001650 -
Mepo4g04933 1045 MobiDBLite consensus disorder prediction 848 867 - -
Mepo4g04933 1045 SMART ring_2 741 779 IPR001841 -
Mepo4g04933 1045 Gene3D - 518 638 IPR038718 -
Mepo4g04933 1045 Gene3D - 271 353 IPR038718 -
Mepo4g04933 1045 SMART ultradead3 291 604 IPR014001 -
Mepo4g04933 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 625 IPR027417 -
Mepo4g04933 1045 ProSitePatterns Zinc finger RING-type signature. 756 765 IPR017907 -
Mepo4g04933 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 791 IPR013083 -
Mepo4g04933 1045 ProSiteProfiles Zinc finger RING-type profile. 741 777 IPR001841 -
Mepo4g04933 1045 Pfam Helicase conserved C-terminal domain 892 987 IPR001650 -
Mepo4g04933 1045 Gene3D - 392 479 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04933 Mepo-Chr4 58572068 58582454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04933 58 945 RAD5 or RAD16-like Gene Family AT1G50410 57.267 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g04933 SNF2_N 2.1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04933 - - gmx:100795142 1494.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04933 4 58572068 58582454 Mepo4g04933 4 58572068 58582454 ECH