Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04923 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAAATCAAGGAAGTCAACATTTCAAAAGAGAAAGGACGGATTAATGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAGTTCTCTATGCTCCCAATTTTGTAGGTCGAGGATTTGCTGAACCTGAAACATGGCCTAAAGACAAAAGAGAGGTACAAAGAATCCTTCAAAAGTACTATAACACAACAAGTGATAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTTTAAGGAAAGGATGAGAAAACTTGAATTTGAGATTTCCAAAGTGCGTAAAGAGAAGTTAAAGATGATGTATCCAACTTGGAATGAATCTTTCAATTCTCTTGGAGCGGAACAATTGATATTATTTGCTAGCAAACTGGAAGCTAAGCTTGATGCTTGTAATCAAAAGAAGCATATGCAAAAAGAAGATCTCAAGGGAAAAACAATAGCTCATGAATCACACAAGGTAGATGAACTAATTAGTACTACTTACTTGGCCCCAAATCCAAGTTACTACTTCAATCTCATGCAAAATTCCATGTCTCAAGCACAAACTTATCCTCCAATGATGAATATTAGTGATAAAAACCCCTTAGGGTTTTGGCCACTTCAACCGGGACAAAGCTCTCAACCTTCTTCTTTGATTTCCAATATACCGAGCTCGCACCATGTGGAGTCTGAGGAGGGTAGATATGTGCAGTCTTACCCCTACAAGCATATTGATGTTAATGGAGCTAATTGGGCCAATCAGATTAATGCTAATGTTACCTACAATCCCAAAATCAATATGGAAAGAAAGGATGAAAACTCGTCACCATACTATTACAATGGAAATGCAAGGGCAATGCAATCATATCCTATTGCTATGCACACTCTCCCTTTTCAGAATCTCTCAAATCTACCACATGGATTTCAACTTAATGGATTCAATGCTAAGGATATTCTGCAAGCTCATATGTTCATGAATGGAAAGAAGTAG 1020 0.3706 MGRGRISMELIQKEKSRKSTFQKRKDGLMKKVNEFSILCDVDVCVVLYAPNFVGRGFAEPETWPKDKREVQRILQKYYNTTSDRRPKIYDVQEYFKERMRKLEFEISKVRKEKLKMMYPTWNESFNSLGAEQLILFASKLEAKLDACNQKKHMQKEDLKGKTIAHESHKVDELISTTYLAPNPSYYFNLMQNSMSQAQTYPPMMNISDKNPLGFWPLQPGQSSQPSSLISNIPSSHHVESEEGRYVQSYPYKHIDVNGANWANQINANVTYNPKINMERKDENSSPYYYNGNARAMQSYPIAMHTLPFQNLSNLPHGFQLNGFNAKDILQAHMFMNGKK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04923 339 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo4g04923 339 Coils Coil 137 157 - -
Mepo4g04923 339 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g04923 339 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g04923 339 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo4g04923 339 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mepo4g04923 339 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Mepo4g04923 339 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo4g04923 339 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Mepo4g04923 339 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g04923 339 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04923 Mepo-Chr4 58465438 58466457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04923 1 144 Type I MADS-box Gene Family AT5G55690 40.000 1.79e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g04923 SRF-TF 8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04923 - - tpra:123913303 458.759