Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04915 ATGTCGGAAACACCGTCGCAGCCACCACTTACCACCACCGAAACCCTACCTCCATACTGGTGCTACCACTGTGACAAACGCGTTTCCGTCGAAACCGTCGCGAATCTCCCCGACCTCATCTGCGGCGATTGCAAAAACGGCTTCGTTGAATCAATCCCCACACCTTCTCGCTCTCGTTCACCTTCTTCCTCTTCCGATGATCCAAATTTCGGTTCTCAATTTCTTCAGGTTCTTCGCCTAATTGCTCAATCATCGCGTGATGATGACGCGTCTCCTCCACCGCCACCAAGTCGTTCACCGGAGAATGATTTTCTCAGAATTGAACTTGGTGGTTGGGACCATGACGATGATGACAACGAAGAAGATGAGTTTCATAACGACGGTGAAGATCACGAAGGTGTTGCCGAAGAGCTTGAGGATCGATTGGGAATCGAGGATCCACACGGTGAAGATGAAGATATGAGACGAAGGAGACGCGATCTGTTACGTCATCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCAGAATCGGATCTTGGATTGGGCTGAAATTCTAATGGGACTTGAAGATAATTCGATTGAGTTTCGTCTTCAGGCACCGGAATTGGACCGGTACGTTGGTAATCCGGAGGATTATGTTGATGCGGCGGAGTATGAGGCGTTGCTGCAGACGTTGGCGGAGAATGATGGAAATGGGAGGAGAGGAGCTCCACCGGCGTCAAAGACGGCTGTGGAAGCATTGCCGACAGTGAAGATTGCGGCAGGGAGTGAGGTGGTTGCTTGTGCTGTATGTAAGGATATGCTTGGTGTTGGAGAAATGGCGAAGAGATTGCCATGTGGGCATGAGTATCATGGAGATTGCATTGTTCCATGGTTGAGTACTAGAAATTCTTGTCCTATTTGCAGGTTTGAGCTTCCAACTGATGATAAGGAGTATGAAGAAGAGAGAGCTTCGGGTTCGGGTCGTGGCGGTGGTGGTGGAGCTTCCACCGTTTGA 1002 0.502 MSETPSQPPLTTTETLPPYWCYHCDKRVSVETVANLPDLICGDCKNGFVESIPTPSRSRSPSSSSDDPNFGSQFLQVLRLIAQSSRDDDASPPPPPSRSPENDFLRIELGGWDHDDDDNEEDEFHNDGEDHEGVAEELEDRLGIEDPHGEDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIEFRLQAPELDRYVGNPEDYVDAAEYEALLQTLAENDGNGRRGAPPASKTAVEALPTVKIAAGSEVVACAVCKDMLGVGEMAKRLPCGHEYHGDCIVPWLSTRNSCPICRFELPTDDKEYEEERASGSGRGGGGGASTV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04915 333 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
Mepo4g04915 333 SMART ring_2 263 303 IPR001841 -
Mepo4g04915 333 FunFam E3 ubiquitin-protein ligase RING1-like 226 310 - -
Mepo4g04915 333 MobiDBLite consensus disorder prediction 85 104 - -
Mepo4g04915 333 MobiDBLite consensus disorder prediction 109 133 - -
Mepo4g04915 333 MobiDBLite consensus disorder prediction 314 333 - -
Mepo4g04915 333 SUPERFAMILY RING/U-box 262 310 - -
Mepo4g04915 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 139 308 - -
Mepo4g04915 333 MobiDBLite consensus disorder prediction 52 71 - -
Mepo4g04915 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 310 IPR013083 -
Mepo4g04915 333 Pfam Zinc finger, C3HC4 type (RING finger) 263 303 - -
Mepo4g04915 333 ProSiteProfiles Zinc finger RING-type profile. 263 304 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04915 Mepo-Chr4 58410461 58414513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04915 103 316 C3H Transcription Factor Family AT5G01980 39.352 9.97e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04915 - - gmx:100780991 456.447