Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo4g04902 | ATGTCTTCTGGCGGCGACGGCGGCGGCGGTGGCGGTGCAGGTAAGCTTTTCTTCTGTCACGTATGCAGTCGGAGAGTTACCTGCACCGACGATGATTCCGAACCTTTCTGCCCAATCTGTTTTCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTCCCATTCCATCCCTTCGCTCTCCTTCCATTACTCCTTAATTCTGCTTCTGTTTCCAGGACTCAACCCGATTCCGACAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGTGTTCCCTCTAATCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTCGCAGAGAATGATCCTAACCGTTATGGAACACCACCGGCATCGAAAGAAGCTGTTAAGAATCTTCTGACGGTGACTGTTGATGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACGCAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCACGATGGTTGCTTACTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGATAACAGTGGCGATGGATTGAGGTCTGTTGTTGGTGGTAACAGTAGTGGTGGTGGTGGTAGCAATGGTGGTGGAGGAGGAAATAGACCTGTCCACAGGACTTTCAGAATATCTCTGCGGTATCCTTTTGGGTCAGGTGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGA | 963 | 0.4787 | MSSGGDGGGGGGAGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTQPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLLTVTVDDALLNSELNQCAVCQDEFEKGTQVKQMPCKHVYHDGCLLPWLELHNSCPVCRHELPTDDADYENRGRDDNSGDGLRSVVGGNSSGGGGSNGGGGGNRPVHRTFRISLRYPFGSGDSAQDSGERGFGNRQEDLD | 320 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo4g04902 | 320 | SMART | ring_2 | 198 | 238 | IPR001841 | - | |
Mepo4g04902 | 320 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 97 | 243 | - | - | |
Mepo4g04902 | 320 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 245 | IPR013083 | - | |
Mepo4g04902 | 320 | ProSiteProfiles | Zinc finger RING-type profile. | 198 | 239 | IPR001841 | - | |
Mepo4g04902 | 320 | MobiDBLite | consensus disorder prediction | 242 | 320 | - | - | |
Mepo4g04902 | 320 | Pfam | Ring finger domain | 196 | 239 | IPR001841 | - | |
Mepo4g04902 | 320 | Pfam | zinc-ribbon | 17 | 47 | IPR039525 | GO:0061630 | |
Mepo4g04902 | 320 | FunFam | E3 ubiquitin-protein ligase RING1-like | 159 | 245 | - | - | |
Mepo4g04902 | 320 | SUPERFAMILY | RING/U-box | 177 | 245 | - | - | |
Mepo4g04902 | 320 | MobiDBLite | consensus disorder prediction | 242 | 259 | - | - | |
Mepo4g04902 | 320 | MobiDBLite | consensus disorder prediction | 263 | 277 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo4g04902 | Mepo-Chr4 | 58317479 | 58319652 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo4g04902 | 142 | 255 | C3H Transcription Factor Family | AT5G01980 | 46.491 | 1.48e-30 | 119 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo4g04902 | K11982 | - | gmx:100785289 | 366.696 |