Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04902 ATGTCTTCTGGCGGCGACGGCGGCGGCGGTGGCGGTGCAGGTAAGCTTTTCTTCTGTCACGTATGCAGTCGGAGAGTTACCTGCACCGACGATGATTCCGAACCTTTCTGCCCAATCTGTTTTCAAGGTTTTCTCGAAGAATGTGAACAACCCGAACCTAACCCTAACCCTAACGTGATTTTCCGCTTCAACCATCATCACGATCATTCCTCCGATTCAGATTCCGAATTCCCATTCCATCCCTTCGCTCTCCTTCCATTACTCCTTAATTCTGCTTCTGTTTCCAGGACTCAACCCGATTCCGACAGTTTCGACCCCTTCGCTTTCCTTCAGAATCATCTCAACGGCCTTCACGCCGACGGTGCAAACATTCAATTCGAGATCAATCATCCTTCTGAATCTGAACCAGGGTTTCGTGTTCCCTCTAATCTTGGCGATTACTTCCTCGGTGCTGGCTTCGAGCAATTGATTCAGCAGCTCGCAGAGAATGATCCTAACCGTTATGGAACACCACCGGCATCGAAAGAAGCTGTTAAGAATCTTCTGACGGTGACTGTTGATGATGCGTTGTTGAACTCGGAGTTGAATCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAAGGTACGCAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCACGATGGTTGCTTACTTCCATGGCTTGAATTGCATAACTCTTGCCCTGTTTGTCGACATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGGTAGGGATGATAACAGTGGCGATGGATTGAGGTCTGTTGTTGGTGGTAACAGTAGTGGTGGTGGTGGTAGCAATGGTGGTGGAGGAGGAAATAGACCTGTCCACAGGACTTTCAGAATATCTCTGCGGTATCCTTTTGGGTCAGGTGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTGGATTGA 963 0.4787 MSSGGDGGGGGGAGKLFFCHVCSRRVTCTDDDSEPFCPICFQGFLEECEQPEPNPNPNVIFRFNHHHDHSSDSDSEFPFHPFALLPLLLNSASVSRTQPDSDSFDPFAFLQNHLNGLHADGANIQFEINHPSESEPGFRVPSNLGDYFLGAGFEQLIQQLAENDPNRYGTPPASKEAVKNLLTVTVDDALLNSELNQCAVCQDEFEKGTQVKQMPCKHVYHDGCLLPWLELHNSCPVCRHELPTDDADYENRGRDDNSGDGLRSVVGGNSSGGGGSNGGGGGNRPVHRTFRISLRYPFGSGDSAQDSGERGFGNRQEDLD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04902 320 SMART ring_2 198 238 IPR001841 -
Mepo4g04902 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 97 243 - -
Mepo4g04902 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 245 IPR013083 -
Mepo4g04902 320 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Mepo4g04902 320 MobiDBLite consensus disorder prediction 242 320 - -
Mepo4g04902 320 Pfam Ring finger domain 196 239 IPR001841 -
Mepo4g04902 320 Pfam zinc-ribbon 17 47 IPR039525 GO:0061630
Mepo4g04902 320 FunFam E3 ubiquitin-protein ligase RING1-like 159 245 - -
Mepo4g04902 320 SUPERFAMILY RING/U-box 177 245 - -
Mepo4g04902 320 MobiDBLite consensus disorder prediction 242 259 - -
Mepo4g04902 320 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04902 Mepo-Chr4 58317479 58319652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04902 142 255 C3H Transcription Factor Family AT5G01980 46.491 1.48e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04902 K11982 - gmx:100785289 366.696