Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04897 ATGGAGAACGACACCACCGCCACCAACAACGGCACGGCCAAAGTAGGTTCAGGCGGAGGAGGAGTCAAATCCAACAATCACATCCGCGAAGAAGAAGAAGAAGAACATTCCAATTTGAATAGCATCGAAAACCTACCAGAAAAAATAGAAGAAAACGATGAACACGAAGCGGAACAACAACAAACTGGATCTGAAACCAATACTCAACAACCTTCCAGAACTCCTTTCACTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCTCGAACCCTTCAAGAGCAGGAAAGGGCGTACATGATGCTGAGAATGAATAACGATGGAAGCGATTATGGAAGTTGGGAGGGTGGGAGCTATTTGCATGACGATGGAGATGATTTTGATGATCTACATGACGACACTGATGTAGATGACGAGGATGATGATGAAGGCGATGACAATGAGGAGGATTATGAAGATGAAGATGAAGACGCATTTGACGTCCATGATCATGCCAGTGTTGGAGACCGTGAGAATAATCCCGTCATTGAATTTGACCCGGAGTTGTTTTCAAGCGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTTGCTCTTGCTGGGATACATGATCTTTCGTTTTCAATTACAGAGGACGCCGAGGACATGGAGGAACATGCTGCTAACTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCGTATGAGGAACTACTGGCACTGGGTGAGGTAGTTGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCTGTTTACCTTCAGTCAACTATAAGACGGGGAGTGATCAACTTGGGAGCAATGATTCGTGTGTCATTTGCCGGGTAGACTATGAGGATGATGAGTCCTTGACAGTTCTTTCATGCAAGCATCTGTACCATCCTGAGTGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1023 0.4604 MENDTTATNNGTAKVGSGGGGVKSNNHIREEEEEEHSNLNSIENLPEKIEENDEHEAEQQQTGSETNTQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDDTDVDDEDDDEGDDNEEDYEDEDEDAFDVHDHASVGDRENNPVIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDLSFSITEDAEDMEEHAANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKTGSDQLGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04897 340 MobiDBLite consensus disorder prediction 1 15 - -
Mepo4g04897 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 336 IPR013083 -
Mepo4g04897 340 MobiDBLite consensus disorder prediction 1 81 - -
Mepo4g04897 340 ProSiteProfiles Zinc finger RING-type profile. 289 330 IPR001841 -
Mepo4g04897 340 MobiDBLite consensus disorder prediction 109 159 - -
Mepo4g04897 340 Pfam Ring finger domain 287 329 IPR001841 -
Mepo4g04897 340 SMART ring_2 289 329 IPR001841 -
Mepo4g04897 340 MobiDBLite consensus disorder prediction 25 60 - -
Mepo4g04897 340 MobiDBLite consensus disorder prediction 61 81 - -
Mepo4g04897 340 FunFam E3 ubiquitin ligase BIG BROTHER-related 255 336 - -
Mepo4g04897 340 MobiDBLite consensus disorder prediction 126 159 - -
Mepo4g04897 340 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 29 338 IPR043312 -
Mepo4g04897 340 SUPERFAMILY RING/U-box 280 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04897 Mepo-Chr4 58269297 58275682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04897 72 224 C3H Transcription Factor Family AT3G19910 54.248 1.26e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04897 K19045 - gmx:100787418 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04897 4 58269297 58275682 Mepo4g04897 4 58269297 58275682 ECH