Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04852 ATGATGGAATTTGAGGAATATGATTATTTAGAGAATGTGAAATCTAGAGATGGAGGTGAACATAGGAAGAGAGATAGGGGGGATAGAGACGGAGAGCGGGATGTTGAAAGAGATAGAAGGAATCGAGAGAAGGAGCCCTCTCAGCGAAGCAAAAGTAGTTCTAGCAGAGACAGAGAGATGAGTCGTGACAGGGTAAATAGAGATAGAGAAAACAGACGGTATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGATTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGATAGAGACGTTTACGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTTTACAATGTCATGTCTGTCCCCATGGCAATAGCCCTTTCAGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATCTGGTTCAGTCTACAGCATCTGTTGCTAATGGGCCTTCTGGAAATTTAGGCCCTTATTCTGGGGGTGCTAGAAGGCTCTATGTTGGTAATCTGCATTCCAGTATTACTGAAGCTGATCTTCGTAGGGTGTTTGAAGCATTTGGTCAAGTTGAGCTAGTCCAGATGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGCCAGTTGGAGATTGGTGGGAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAATTCGGCGGAAATACTGGTGATATTGATGATGTTGAAGGTGGTGGATTGTCCTTGAATGCCTCTTCTCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGCATTGCATCAAGTATGGTTGGTTTGCTGGGAAATTCTGTTGTCAACAATACAGGCCTTAATCTGCAAGCAATGGGAAACATACCAGCAGTTGCTCTTATTCCCGCCCCAGGAGTTGGAATGCCATGTGGAGGTCTCCAAATTCCAATGCTGACAAGTCCTACTATTGATACAATCGGCACTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGGAAAATGAGAAGGAACCAGACTTTGATTTGGATGTTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGAACTTAAAACATATATATGTTGATAAGAGGAGTGCCGGATTTGTCTACTTAAGATTTGAAAATACCCAATCTGCAATAAGTGCACAGCGTTGCTTACATGGAAGATGGTTTGCAGGGAAAATGATCACTGCAAGCTTTATGGTGCCCCAGTCATATGAGGATCGATTCCCAGACAGTAAATGA 1416 0.4294 MMEFEEYDYLENVKSRDGGEHRKRDRGDRDGERDVERDRRNREKEPSQRSKSSSSRDREMSRDRVNRDRENRRYKEKKEEAAEPEIDPERDQRTVFAYQISLKADDRDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYNVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVANGPSGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQMPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDVEGGGLSLNASSRALLMQKLDRSGIASSMVGLLGNSVVNNTGLNLQAMGNIPAVALIPAPGVGMPCGGLQIPMLTSPTIDTIGTPSECLLLKNMFDPENEKEPDFDLDVKEDVEAECSKFGNLKHIYVDKRSAGFVYLRFENTQSAISAQRCLHGRWFAGKMITASFMVPQSYEDRFPDSK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04852 471 Gene3D - 372 471 IPR012677 -
Mepo4g04852 471 NCBIfam splicing factor, CC1-like family 14 469 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mepo4g04852 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 170 IPR000504 GO:0003723
Mepo4g04852 471 CDD RRM3_RBM39_like 376 458 - -
Mepo4g04852 471 FunFam Splicing factor CC1-like 12 178 - -
Mepo4g04852 471 CDD RRM1_RBM39_like 94 166 - -
Mepo4g04852 471 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 18 470 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mepo4g04852 471 SUPERFAMILY RNA-binding domain, RBD 197 464 IPR035979 GO:0003676
Mepo4g04852 471 MobiDBLite consensus disorder prediction 1 90 - -
Mepo4g04852 471 SMART rrm2_1 198 270 IPR003954 GO:0003676
Mepo4g04852 471 SMART rrm2_1 378 456 IPR003954 GO:0003676
Mepo4g04852 471 MobiDBLite consensus disorder prediction 7 90 - -
Mepo4g04852 471 SMART rrm1_1 94 166 IPR000504 GO:0003723
Mepo4g04852 471 SMART rrm1_1 198 270 IPR000504 GO:0003723
Mepo4g04852 471 SMART rrm1_1 378 456 IPR000504 GO:0003723
Mepo4g04852 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 400 453 IPR000504 GO:0003723
Mepo4g04852 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Mepo4g04852 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 162 IPR000504 GO:0003723
Mepo4g04852 471 SUPERFAMILY RNA-binding domain, RBD 32 168 IPR035979 GO:0003676
Mepo4g04852 471 Gene3D - 178 280 IPR012677 -
Mepo4g04852 471 Gene3D - 17 177 IPR012677 -
Mepo4g04852 471 FunFam CC1-like, splicing factor 192 300 - -
Mepo4g04852 471 FunFam Splicing factor, CC1-like protein 372 471 - -
Mepo4g04852 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Mepo4g04852 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 377 460 IPR000504 GO:0003723
Mepo4g04852 471 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 289 395 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04852 Mepo-Chr4 57875659 57883606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04852 94 260 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 1.01e-14 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04852 4 57875659 57883606 Mepo4g04852 4 57875659 57883606 ECH