Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04844 ATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGCTGGGATTATTGTGTCTACTGGAAATTAAGTGAAGATCAAAGGTATCTTGAATGGTTGGGATGTTGTTGTGGTGGGAGTGAAAGCAACCAAAATGGTGGAGAAGAACATCTTTTCCCTGTCTCTTCATGTAGGGATACAATGTTTTCACACCCAAGAACAAACTCTTGTGATCTTCTTTCCCAACTTTCTACTTCCATACCTATAGATTCAGGGATTCATGCACAAACTCTATTAACTAACCAACCCAATTGGTTGAACTATCCCAATATATTGGATCCAAACACTTTACATGAAACAATTAATGGGACCCATGTTTTGATTCCAGTGCCTGGTGGACTGGTTGAGCTCTTTGTAACTAAACAGGTTGGTGAAGATCAACATGTAATAGATTTTATCACATCTCAATGCATTGTCATGGTGGATCAAGAAGGGATGAACCACTCAATTGGCTTCAATTCAATGAGCAATATGCAATCAAATCCAATTGTAGGTGATGGAAATAACACAAACAATCTTTTCCGTTCATCAGAGACATTGAATCTTCCACATGACATATCTGTATTGAACTTCATGCAACAGTTCAACTACAGTTACAATCATCAACAAAACAGAATCAAGAACGACGAAACCTTCTCTGAAGAATACCAAGGTTCTTTCCTTCATGATCATGAAAACAACAACACTCTCAAATCCAACACAGAAGAGGATCATGATAACAAAAGCTTGATGACAGAAAATAATCAATATATGTTTGTGGATCCCTTAGACACAAAAAAGAAGCAAGAACATGTTGTTGGTAGATCAGATTCTATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAATATAGGAGAAGAAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGGAAGAAGCTGAATGATAGGTTATATAACCTTCGTTCATTGGTTCCAAGAATCTCAAAGCTTGATAGAGCTTCTATTCTTGGTGATGCTATTGAATATGTGAAGGATTTGCAGAAGCAAATGAAGGAACTTCAAGATGAGCTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGCATTGTTAATGGAAATAATGATCAATATGTTGGTGGTGTTCAAGGTCAACCAGATAATAATAACAATGTTCCAAAAGCAGAACATGGTTTTCATGTTGGGAATGGCTATGTTTCAAAACAAAAGCAAGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGCCACGAGTAGAAGTGGCTCAGTTAGATGGGAATGAGTACTTTGTGAAGGTGTTTTGTGAGCAGAGGCCTGGTGGTTTTGTGAAATTGATGGAGGCTATGAACACTTTAGGCATGGATGTAATGCATGCCACGGTAACCAGTCACAAGGGTCTTGTCTCAAATGTTTTTAAAGTTGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGAAGTTAGAGATTCACTACTAGAGCTGACACGGAACAAATCTAAATGTTGGAATTTGGAATCATGA 1587 0.3793 MQNFTERLRPLVGLNGWDYCVYWKLSEDQRYLEWLGCCCGGSESNQNGGEEHLFPVSSCRDTMFSHPRTNSCDLLSQLSTSIPIDSGIHAQTLLTNQPNWLNYPNILDPNTLHETINGTHVLIPVPGGLVELFVTKQVGEDQHVIDFITSQCIVMVDQEGMNHSIGFNSMSNMQSNPIVGDGNNTNNLFRSSETLNLPHDISVLNFMQQFNYSYNHQQNRIKNDETFSEEYQGSFLHDHENNNTLKSNTEEDHDNKSLMTENNQYMFVDPLDTKKKQEHVVGRSDSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQMKELQDELEENSDTGTESNCIVNGNNDQYVGGVQGQPDNNNNVPKAEHGFHVGNGYVSKQKQEDVGTVTDKQTQQMEPRVEVAQLDGNEYFVKVFCEQRPGGFVKLMEAMNTLGMDVMHATVTSHKGLVSNVFKVEKKESEIVEAEEVRDSLLELTRNKSKCWNLES 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04844 528 Gene3D - 298 374 IPR036638 GO:0046983
Mepo4g04844 528 MobiDBLite consensus disorder prediction 236 256 - -
Mepo4g04844 528 CDD ACT_UUR-ACR-like 453 516 - -
Mepo4g04844 528 Coils Coil 348 375 - -
Mepo4g04844 528 CDD bHLH_AtAMS_like 312 382 - -
Mepo4g04844 528 MobiDBLite consensus disorder prediction 275 320 - -
Mepo4g04844 528 SMART finulus 315 364 IPR011598 GO:0046983
Mepo4g04844 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 372 IPR036638 GO:0046983
Mepo4g04844 528 Pfam Helix-loop-helix DNA-binding domain 316 359 IPR011598 GO:0046983
Mepo4g04844 528 Coils Coil 496 516 - -
Mepo4g04844 528 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 136 518 - -
Mepo4g04844 528 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 150 IPR025610 -
Mepo4g04844 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 358 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04844 Mepo-Chr4 57788448 57791242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04844 1 524 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 48.346 2.77e-148 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g04844 bHLH-MYC_N 1.2e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04844 - - mtr:25485620 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04844 4 57788448 57791242 Mepo4g04844 4 57788448 57791242 ECH