Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04816 ATGGCTGCATCATCTTCCTCAGCCTCACTTTTTGGATTCAGAGAAGAAGATCCGAATCCGATGAATCAACAACAGCATTCTCTGCCACCATCTTCATCAACTGCAACTCCAGCTGCTGCACCAGCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCTAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTTCATCATGACCCTTCAAGAGCACTTGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCAAAGAAGTATGCTGTTCAATCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAATATAGGTGTGACTGTGGCACTCTCTTCTCCAGGAGAGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGGGTCCAAGACAGCCACCAATTTCTCTAACTGGTGCCATTGGATCCCATCTCTATGGAAGCTCAAGCAACAACAACACCATGGGTCTAAGCATAGCCCAGGTAGCTGCACAAATGCCCAACATGCAACAACAAGACCACCACAGCAATTCAGCCACTGAAATCTTGAGACTCGGCGCAGCTGCCGCCAATCGGACCGGGCAATTCGACCACCACATGCTTCCCCAGGCTACTTTCAGACCTAATTCCTTCTTCAACAACAACATTCATGAGCCAAACCAAAACTTTGTTCCTCATGATCCTTCTCAACAACAAGGTTTAATGATGCAGAATAGCCACAATAGCAACAACAGCAATCTCTTCAACATTCCGAATTTCCTTTCAAGTAACAGTACTAACAGTAGCAACAACTCATTCTCTGAACACTTGAATGTGAATAATGAAGGAACAAATTTCTTCAATGGATCAGGTGGAACAAGTAGTGCTCCATCACTCTTCAGCAATGTTTTTTCCCAAGGAGGAAACAGTAACATTAATGCTGCTGGTACTGCTATATCATCAATGTCAGCAACTGCACTTCTTCAGAAAGCTGCTCAAATGGGTGCAACTTCAAGTAATGGAAATGGCACTACGGCGACTTCGCTTCTCAAAAGCTTTGGAAACAATACTGGTGCAAGTAACTCAGCTTCTTCTGGTGGCGGTGATCATAGCAGAGTGCAAATGGGTGGTGGAAGTGGGAACTATGGTTTTGGTGGTGGGAATCATGAACAGAGTAATTTGCAGGATTTGATGAACTCTTTTGCTGCTACAGGAAATACTTCAATATTTGATCAAACTGGAGGAGGAGGAGGGGGTGTAGGGCTTGGAAGAGGAGGTGGTGATAGTAGTCAGCTGACTCGTGACTTTTTAGGAGTTGGTCATGAGATTGTGAGAAGCATGAGTGGTGTTGTTGGAGGAGCTGGACAAAGGGATCAACATGCAGCTGCTTTTAACTTGGCAGCTTCTTTGGAAGGAGATCAGAGAAACAACATCAATGCTGCACAATCATTTGGAGGAGGAAGAGGAGGTGCTGGTGGTGGAGCAGGAGGAAATTTTCATTGA 1707 0.4499 MAASSSSASLFGFREEDPNPMNQQQHSLPPSSSTATPAAAPAQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPISLTGAIGSHLYGSSSNNNTMGLSIAQVAAQMPNMQQQDHHSNSATEILRLGAAAANRTGQFDHHMLPQATFRPNSFFNNNIHEPNQNFVPHDPSQQQGLMMQNSHNSNNSNLFNIPNFLSSNSTNSSNNSFSEHLNVNNEGTNFFNGSGGTSSAPSLFSNVFSQGGNSNINAAGTAISSMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTGASNSASSGGGDHSRVQMGGGSGNYGFGGGNHEQSNLQDLMNSFAATGNTSIFDQTGGGGGGVGLGRGGGDSSQLTRDFLGVGHEIVRSMSGVVGGAGQRDQHAAAFNLAASLEGDQRNNINAAQSFGGGRGGAGGGAGGNFH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04816 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Mepo4g04816 568 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Mepo4g04816 568 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Mepo4g04816 568 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Mepo4g04816 568 MobiDBLite consensus disorder prediction 1 39 - -
Mepo4g04816 568 MobiDBLite consensus disorder prediction 547 568 - -
Mepo4g04816 568 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Mepo4g04816 568 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 524 IPR031140 -
Mepo4g04816 568 MobiDBLite consensus disorder prediction 1 58 - -
Mepo4g04816 568 SMART c2h2final6 73 95 IPR013087 -
Mepo4g04816 568 SMART c2h2final6 149 169 IPR013087 -
Mepo4g04816 568 SMART c2h2final6 114 144 IPR013087 -
Mepo4g04816 568 Gene3D Classic Zinc Finger 127 203 - -
Mepo4g04816 568 Gene3D Classic Zinc Finger 52 121 - -
Mepo4g04816 568 FunFam protein indeterminate-domain 12-like 52 120 - -
Mepo4g04816 568 MobiDBLite consensus disorder prediction 425 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04816 Mepo-Chr4 57540699 57547935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04816 43 517 IDZ Gene Family AT2G02070 49.724 1.66e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g04816 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04816 K25870 - gmx:100799389 572.007