Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04779 ATGCTTCCTATGAGCTGCATTCTTTTAATGTCCCTCTTGTGTTCTTTCTTACTCCAAATCAAAGCTTTCTCCAACCTCACCTTACCCCACCAACATCCTTACCCTGAAGCTGTGGTTCACGAACTTCATCATAAAATCAATGTGTCATTTTCAAGAAGGGAACTACTCTCTAAAGACCAAGGTAATTGTTTAACCGGAAACCCAGTAGACGATTGCTGGCGGTGCGACCCAAACTGGTCCGCAAACCGTCAGAAATTAGCGGAATGCGGAATTGGTTTCGGTCGCGCCGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTAACAGATTCCTCCGACAACGACCCAGCCAATCCCGTTCCAGGAACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATAATCTTCTCCTCTTCCATGACAATAAATCTCCGTCACGAACTCATCTTCAATTCTTACAAAACCGTGGACGGTCGCGGCGCAAATGTTCAAATCACCGGCCACGGTTGCATCACACTCCAATACATCTCAAACGTGATAATCCACAATATCCATGTTCATCACTGTAGACCCTCAGGGAATACTAACATACGCGCGAGTCCAACGCATGTAGGATTCAGAGGCATATCGGACGGTGATGGTATATCAATCTTCGGTTCACGTAACATCTGGATCGACCATTGCTCGTTATCTTATTGCACCGACGGTTTAATCGATGCTATAATGGGGTCCACTGCAATAACAATATCGAATAACCATTTTGGTCATCACGATGAAGTTATGCTTTTAGGTCATAATGATAAATACAGTCCAGATAGAGGAATGCAAGTAACAATAGCGTTTAATCACTTTGGTGAAGGACTTGTTCAAAGAATGCCACGTTGTAGACTTGGTTATATTCATGTTGTTAACAATGATTTTACACAGTGGGAAATGTATGCTATCGGAGGTAGTGCTAATCCTACTATTAACAGTCAGGGTAACCGTTACACCGCTCCTTCCGATCCAAATGCTAAAGAGGTGACAAAGCGCGTGGATACGAATGATAAAGAATGGAGTGGTTGGAATTGGAGGACGGAAGGGGATATAATGGTAAATGGAGCATTCTTTGTGCCGTCAGGGGTTGGGATGAGTGCTCAGTATGCGGAGGCGTCAAGTGTACAGCCAAAATCCGTGGAGCAAATTAACCAGCTTACCATGTACTCTGGTGTATTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGGTTCAACGGTGGTGGGACCACGACAGGAGCCAACAGCAAGGGTTACAATGGGAATGGGGGGTCCAGCAATGACGATGGGGACTTCTTTGGGATGATATTCAAAGGTACCAGCAGCCAAGCAGCACCGCTAGCACCCTACTCATCAATTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCAATTTGGACATTATCACCAACTATGATATTTTATTATCATTACTATGA 1491 0.4433 MLPMSCILLMSLLCSFLLQIKAFSNLTLPHQHPYPEAVVHELHHKINVSFSRRELLSKDQGNCLTGNPVDDCWRCDPNWSANRQKLAECGIGFGRAAMGGKGGQIYIVTDSSDNDPANPVPGTLRHAVIQDEPLWIIFSSSMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCRPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFGHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVDTNDKEWSGWNWRTEGDIMVNGAFFVPSGVGMSAQYAEASSVQPKSVEQINQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGANSKGYNGNGGSSNDDGDFFGMIFKGTSSQAAPLAPYSSIVFVSTFLSLLIIFNLDIITNYDILLSLL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04779 496 SMART amb_all 141 338 IPR002022 -
Mepo4g04779 496 SUPERFAMILY Pectin lyase-like 67 387 IPR011050 -
Mepo4g04779 496 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Mepo4g04779 496 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Mepo4g04779 496 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Mepo4g04779 496 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Mepo4g04779 496 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Mepo4g04779 496 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Mepo4g04779 496 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Mepo4g04779 496 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Mepo4g04779 496 FunFam Pectate lyase 66 408 - -
Mepo4g04779 496 Pfam Pectate lyase 149 330 IPR002022 -
Mepo4g04779 496 Gene3D - 66 408 IPR012334 -
Mepo4g04779 496 PANTHER PECTATE LYASE 18-RELATED 29 407 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04779 Mepo-Chr4 57223208 57229537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04779 1 481 Polysaccharide Lyase AT3G53190 62.910 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04779 K01728 - gmx:100808438 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04779 4 57223208 57229537 Mepo4g04779 4 57223208 57229537 ECH