Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04771 ATGTCTGGAAAAGAAGAAAATCGAATATTTGTTGGTGGTTTGGGTTGGGATGTTACGGAACGTCAACTTGAACATGCTTTTGATCGTTACGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGGGATACAGGACGTCCACGTGGATTTGGGTTTATTACATTTTCAGACCGTCGGGGAATGGAGGATGCAATCAAAGAAATGGATGGACGGGAAATTGGTGATCGCATCATCTCAGTCAACAAGGCACAGCCCAGGATGGGGGCTGATGATGCAGACCAACGTTACAGAGGTGGTTTTTCTTCTGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGATGGTGGTCGTGGTCGGGGTGGTGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGGGATCGCCTTGGTGAACGTGAGCGATACATTGATGATCGTTATGACGGAGGACGTTATGGGGATAGGGATCGTTTAGACAACCGAGACTACAAGTATAGTGGCCGTGATCGCTATGCTAGTGACAGGTATACAACTAGTGGAGATCGATCTGCAAGTGATCGATATGGCAGTGGCTCAGACTACCCTCAAAATGGTTATGGGAAGGAAAGAGGCTATGACCGAAACGGTGGTGCGCGTGGAGGTGCTGATAGATATGGAAGCGGAATGCCAGCTCGTGACGAAGGAAGGAGTTATAGGGGTAGACCTGGTCCTTATGACCGCCCAAGCAGGGCTGCTCGTCCACCATCATTTGACCGCTACTGA 831 0.5006 MSGKEENRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRGMEDAIKEMDGREIGDRIISVNKAQPRMGADDADQRYRGGFSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGGGSFSSRPRFGGDRLGERERYIDDRYDGGRYGDRDRLDNRDYKYSGRDRYASDRYTTSGDRSASDRYGSGSDYPQNGYGKERGYDRNGGARGGADRYGSGMPARDEGRSYRGRPGPYDRPSRAARPPSFDRY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04771 276 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 267 - -
Mepo4g04771 276 Gene3D - 115 143 - -
Mepo4g04771 276 SUPERFAMILY Retrovirus zinc finger-like domains 103 137 IPR036875 GO:0003676|GO:0008270
Mepo4g04771 276 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Mepo4g04771 276 MobiDBLite consensus disorder prediction 200 215 - -
Mepo4g04771 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mepo4g04771 276 MobiDBLite consensus disorder prediction 135 160 - -
Mepo4g04771 276 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Mepo4g04771 276 MobiDBLite consensus disorder prediction 193 276 - -
Mepo4g04771 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mepo4g04771 276 Gene3D - 2 114 IPR012677 -
Mepo4g04771 276 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Mepo4g04771 276 MobiDBLite consensus disorder prediction 85 110 - -
Mepo4g04771 276 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mepo4g04771 276 FunFam glycine-rich RNA-binding protein RZ1C 1 114 - -
Mepo4g04771 276 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04771 Mepo-Chr4 57133474 57138387 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04771 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 3.46e-16 76.3