Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04768 ATGTCTGGAAAACAAGAGCATCGAATATTTGTTGGTGGATTGGGTTGGGATGTTACGGAACGTGAACTTGAAGAAGCCTTCGAGTGTTACGGCAAAATTCTTGAATGCCAGATCGTGATGGAAAGGGATACTGGACGTTCGCGTGGATTATGGTTTATTATATTTGCAGATTGTCAGGGAATGGAGGATGCAATCAAACACATGGATGGACTGGAAATTTGTGATCGCATCCTCTCTGTCGAAAAGGCACATGCCAGGATGGGGGGCGATGATGCTGACCAACATCACAATGAAGATAGGGCAAGGCAGAATGACTGTTTCAGATGTGGGCATCCAGGGCATCGGGCCCGAGATTATCGTTTCTCAGAAGATGATAGTGACGCTGGAGATAGGGTAGGGCGTGATGACTGTTTCAGATGTGGGCGTCCAGGGCACTGGGCCCGAGAATGTACTTTCACAAGAGGTGATGATGTGGCTGGAGATGGGGTGGGTCACAATGACTGTTTCAGATGTGGCCGTCCAGGGCACTGGGCCCGAGAATGTCCTCTCCCAAGAGATGATGATGGGGCTGGAGATAGGGTAGGGCGTGGCCGGTGA 597 0.5042 MSGKQEHRIFVGGLGWDVTERELEEAFECYGKILECQIVMERDTGRSRGLWFIIFADCQGMEDAIKHMDGLEICDRILSVEKAHARMGGDDADQHHNEDRARQNDCFRCGHPGHRARDYRFSEDDSDAGDRVGRDDCFRCGRPGHWARECTFTRGDDVAGDGVGHNDCFRCGRPGHWARECPLPRDDDGAGDRVGRGR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04768 198 Gene3D - 161 189 - -
Mepo4g04768 198 Pfam Zinc knuckle 106 118 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 Pfam Zinc knuckle 168 182 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 Pfam Zinc knuckle 137 151 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 SUPERFAMILY Retrovirus zinc finger-like domains 128 184 IPR036875 GO:0003676|GO:0008270
Mepo4g04768 198 ProSiteProfiles Zinc finger CCHC-type profile. 168 182 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mepo4g04768 198 Gene3D - 2 101 IPR012677 -
Mepo4g04768 198 Gene3D - 102 159 - -
Mepo4g04768 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mepo4g04768 198 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 5 163 - -
Mepo4g04768 198 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 SUPERFAMILY RNA-binding domain, RBD 4 87 IPR035979 GO:0003676
Mepo4g04768 198 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 ProSiteProfiles Zinc finger CCHC-type profile. 106 118 IPR001878 GO:0003676|GO:0008270
Mepo4g04768 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04768 Mepo-Chr4 57124692 57125705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04768 6 98 C2H2 Transcription Factor Family AT2G19380 37.634 5.11e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04768 - - cave:132187196 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04768 4 57124692 57125705 Mepo4g04768 4 57124692 57125705 ECH