Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04743 ATGAAGGTTTTCGTCAAGACTCTTAAAGGAACTCACTTCGAAATCGAAGTCACGCCACAAGACTCGATTTCCGCAGTGAAGAAAAATATAGAAACCGTTCAAGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTTTGAAGGATGGTACCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTGATCATGCTTTCAAAGAGTAAGCCTGCATCTGGTGAAGGGTCTACTACTTCAAATGCTCCTCCAGCGAAGGCCCCACAGACGAGTGCTGCTCCTACTTCAACTCCCCCAGTGTCTGTTTCACCTCAAGCTCCTGCCGCAACTGCGGCACCGCCTGCATCCGTTGCTGCACCTTCCCCAGCTCCAGCTCCTGTTCCTATATCTTCGGCAACTGCTACCAGGGAAGGTTCTGATGTCTATGGGCAAGCTGCATCTAATCTGGTTGCCGGTAGCAACTTGGAGGGAACAGTTCAACAAATCCTAGATATGGGAGGAGGAAGCTGGGATAGGGATACTGTAATTCGTGCTCTTCGAGCTGCCTTCAATAACCCTGAGAGAGCGGTTGAATATTTGTATTCAGGTATACCCGAACAAGCTGAAGCTCCAGCAGTGTCCCGAGTGCCTGCAAGTGCACAACCTGTGAATCCAGAGGCTGCAGCTGCAGCTGCAGCTCCACAAGCAGCTCAGCCTGCTCCTGTTACCTCAACTGGACCTAATGCCAATCCTCTAGATCTCTTTCCCCAGGGCCTCCCAAATATTGGTGCTGGTGCTGCTGGTGCCGGCTCTCTGGATTTTCTACGCAATAGTCAACAATTCCAAGCATTGCGAGCTATGGTGCAGGCAAATCCACAAATATTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGGGATCATCAGGCTGACTTCCTTCGTCTGATAAATGAACCTATGGAGGGCGGAGAAGGGAATAACCTATTGGGACAGATGGCTGCTGGCATGCCACAATCAGTAACTGTCACACCCGAGGAGCGCCAAGCTATTGAACGTCTGGAAGCAATGGGTTTTGATCGTGCTATAGTATTGGAGGTGTTCTTTGCTTGCAACAAAAATGAGGAATTGGCCGCCAACTACCTTTTAGACCACATGCATGAGTTCGACGAACAATGA 1203 0.4855 MKVFVKTLKGTHFEIEVTPQDSISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKPASGEGSTTSNAPPAKAPQTSAAPTSTPPVSVSPQAPAATAAPPASVAAPSPAPAPVPISSATATREGSDVYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPAVSRVPASAQPVNPEAAAAAAAPQAAQPAPVTSTGPNANPLDLFPQGLPNIGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPMEGGEGNNLLGQMAAGMPQSVTVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFDEQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04743 400 PRINTS DNA repair protein Rad23 signature 366 380 IPR004806 GO:0006289
Mepo4g04743 400 PRINTS DNA repair protein Rad23 signature 381 396 IPR004806 GO:0006289
Mepo4g04743 400 PRINTS DNA repair protein Rad23 signature 299 321 IPR004806 GO:0006289
Mepo4g04743 400 PRINTS DNA repair protein Rad23 signature 349 365 IPR004806 GO:0006289
Mepo4g04743 400 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mepo4g04743 400 SUPERFAMILY XPC-binding domain 270 335 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mepo4g04743 400 SMART ubq_7 1 75 IPR000626 GO:0005515
Mepo4g04743 400 SUPERFAMILY UBA-like 160 215 IPR009060 GO:0005515
Mepo4g04743 400 Gene3D - 264 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mepo4g04743 400 SUPERFAMILY UBA-like 336 398 IPR009060 GO:0005515
Mepo4g04743 400 SMART uba_6 163 203 IPR015940 -
Mepo4g04743 400 SMART uba_6 355 392 IPR015940 -
Mepo4g04743 400 CDD Ubl_Rad23 1 74 - -
Mepo4g04743 400 Gene3D - 1 80 - -
Mepo4g04743 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 352 393 IPR015940 -
Mepo4g04743 400 FunFam UV excision repair protein RAD23 B 264 329 - -
Mepo4g04743 400 MobiDBLite consensus disorder prediction 78 139 - -
Mepo4g04743 400 FunFam UV excision repair protein RAD23 homolog 346 394 - -
Mepo4g04743 400 Pfam XPC-binding domain 273 328 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mepo4g04743 400 SMART CBM 271 314 IPR006636 -
Mepo4g04743 400 NCBIfam UV excision repair protein Rad23 1 398 IPR004806 GO:0006289
Mepo4g04743 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 161 204 IPR015940 -
Mepo4g04743 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 388 - -
Mepo4g04743 400 Gene3D - 156 206 - -
Mepo4g04743 400 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mepo4g04743 400 FunFam UV excision repair protein RAD23 homolog 156 206 - -
Mepo4g04743 400 FunFam UV excision repair protein RAD23 1 80 - -
Mepo4g04743 400 CDD UBA1_Rad23_plant 157 206 - -
Mepo4g04743 400 MobiDBLite consensus disorder prediction 227 248 - -
Mepo4g04743 400 Pfam UBA/TS-N domain 166 201 IPR015940 -
Mepo4g04743 400 Pfam UBA/TS-N domain 355 390 IPR015940 -
Mepo4g04743 400 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Mepo4g04743 400 Gene3D - 347 394 - -
Mepo4g04743 400 MobiDBLite consensus disorder prediction 79 112 - -
Mepo4g04743 400 CDD UBA2_RAD23_plant 351 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04743 Mepo-Chr4 56895092 56899409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04743 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 2.86e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04743 K10839 - gmx:100814162 600.512