Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04650 ATGTCCATGACCAGCAACCCTAAGAATATGTACAGTCTCACAGCTTCTGCTATTCGTTTCTTTAAGATTGTTACCTCAACAAATATTCAAGATGGAACCCTTAGAATTCCAAATGCTTTCACTGAGAAATATATGGGTGATTTATCAAAGCCAATGTTTCTCAAGACTCCCGATGACAAAGAATGGGAAATACATTTGACTAAAAAGGATGGTGATATTTGGATTCAAAGGGGTTGGAAGGAATTTGCTACACATTATTCATTAGATCATGGTCACATGGTGGTGTTTCAATATCAGAAAACCTCTCATTTTGAGGTTTACATATTTGACAAGAGTACTTTTGAAATTGAATATCGTGTTGATGGTAATAATCAACATGAACAGAACAACCCAATTGAAATTTTGAATGAGCAACCTTCTTACAAGAACAGTAGACCAAAATCACAAATTTCAAGTTCTCAACCACTTAAGAAATTGAGAATTGACACAAGTGAAGATGTTGGAACAAGCTCCAAATCGCAAAACATTCCTAAACTTGTCCAAGTTAAAGTTCATGGAGATGGAATTAACTGGTTAGAAACTGCAGGAATCACAGAATTTGAAAGTAAAACTATTATGTCGTATAAAGGAACGAAGGAAACTCAAAGAAATTCACTGCAGGCTAGGCCATGCTCCTTCAAAAATTCTGAAGCTAAGAAAGAAGCCAATCAATTCACATCCACTTTGGAAAAACCAAATTTCACTATCAATTTGAGATCAAGTCATTGGGATGTTTACAGACCGCGTGTACGAAATTCATTCTCGAGCAAGTACTTGGGTCCCAAAAAGAAGACTGCAATGTTACAGTTTGAGGAAAAATTGTGGCCTGTACAATTGATGTATTATCCATCCGAACCAGCAACAAAGTTGGGCGAAGGTTGGAGTCTGTTTGTAGAAGAAAATAAATTGCAGGCTGGAGATGTATGTGTTTTTGTGCTTGCCAACAAGGAAGATGTTGTGCTTGATGTTCATATTTTCAGAGGATGCAGTTAG 1032 0.3663 MSMTSNPKNMYSLTASAIRFFKIVTSTNIQDGTLRIPNAFTEKYMGDLSKPMFLKTPDDKEWEIHLTKKDGDIWIQRGWKEFATHYSLDHGHMVVFQYQKTSHFEVYIFDKSTFEIEYRVDGNNQHEQNNPIEILNEQPSYKNSRPKSQISSSQPLKKLRIDTSEDVGTSSKSQNIPKLVQVKVHGDGINWLETAGITEFESKTIMSYKGTKETQRNSLQARPCSFKNSEAKKEANQFTSTLEKPNFTINLRSSHWDVYRPRVRNSFSSKYLGPKKKTAMLQFEEKLWPVQLMYYPSEPATKLGEGWSLFVEENKLQAGDVCVFVLANKEDVVLDVHIFRGCS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04650 343 Gene3D - 13 113 IPR015300 -
Mepo4g04650 343 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Mepo4g04650 343 SUPERFAMILY DNA-binding pseudobarrel domain 242 340 IPR015300 -
Mepo4g04650 343 ProSiteProfiles B3 DNA-binding domain profile. 288 342 IPR003340 GO:0003677
Mepo4g04650 343 CDD B3_DNA 245 340 IPR003340 GO:0003677
Mepo4g04650 343 PANTHER B3 DOMAIN-CONTAINING 16 336 - -
Mepo4g04650 343 SMART B3_2 246 342 IPR003340 GO:0003677
Mepo4g04650 343 SMART B3_2 20 112 IPR003340 GO:0003677
Mepo4g04650 343 MobiDBLite consensus disorder prediction 138 172 - -
Mepo4g04650 343 MobiDBLite consensus disorder prediction 138 158 - -
Mepo4g04650 343 Pfam B3 DNA binding domain 20 111 IPR003340 GO:0003677
Mepo4g04650 343 Pfam B3 DNA binding domain 263 340 IPR003340 GO:0003677
Mepo4g04650 343 Gene3D - 225 342 IPR015300 -
Mepo4g04650 343 CDD B3_DNA 19 110 IPR003340 GO:0003677
Mepo4g04650 343 SUPERFAMILY DNA-binding pseudobarrel domain 16 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04650 Mepo-Chr4 55968514 55971336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04650 20 340 B3 DNA Binding Superfamily AT3G18990 29.032 1.83e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g04650 B3 1.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04650 - - tpra:123902302 286.96