Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04628 ATGGGGGATCACTTTGATTTACTCGTTGATCGGTTGCTCACTGAATCAACATTAGAAGCTGCTATTGAAAGCAGAAAGCGTGAGATGCAGGCTGCGTCCTCGGAGGTGACTAGCGCTGAAGTTGATCATTCTTTGTTGAAGATGGGTATCAAATGTTCCGGGAAGCTGGCAGAATGCAGGATATGTCATGACGATGATGATGATTCCAATATGGAGACACCCTGTTCCTGTTGTGGTAGTTTGAAGTACGCCCACAGAAGATGCATACAGCGGTGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCATCAGCCATTCAAGCCTGGTTACACAGCTCCTCCTCCACTTTTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAAATTTCACGAAGAGACTTAAATAGTGCTCATTTGGTTAGCATGGTTCCCACTGACCAGAACCTTATCGATTCTAACTATGATCAATATTCAACCTCTTCTTCGGGAAGTTTGATATGCTGCCGTTCAGCTGCTGTCGTTTTCATGGTTCTGCTGATTCTAAGACACACTCTTCCCCTCGTAATTAGTGGAAATAAAGACTATTCTTTCCCACTTTTCATGGTTTTATTATTTCGGAGTGCTGGTATCATTGTACCTATATACTTCATGGTTAGAGCAGTGGCACTAATCCAGCGACATCGGAGACAACATCGAGTGAGTTTCTATCATCGATTAATCTTTTTGTCTCTTCACCATGGTGCACACGAATCTTCTAATTACTCACAGTAA 786 0.4326 MGDHFDLLVDRLLTESTLEAAIESRKREMQAASSEVTSAEVDHSLLKMGIKCSGKLAECRICHDDDDDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSAHLVSMVPTDQNLIDSNYDQYSTSSSGSLICCRSAAVVFMVLLILRHTLPLVISGNKDYSFPLFMVLLFRSAGIIVPIYFMVRAVALIQRHRRQHRVSFYHRLIFLSLHHGAHESSNYSQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04628 261 Pfam Protein of unknown function (DUF3675) 110 226 IPR022143 -
Mepo4g04628 261 Pfam RING-variant domain 59 104 IPR011016 GO:0008270
Mepo4g04628 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 114 IPR013083 -
Mepo4g04628 261 FunFam Zinc finger family protein 47 114 - -
Mepo4g04628 261 ProSiteProfiles Zinc finger RING-CH-type profile. 51 111 IPR011016 GO:0008270
Mepo4g04628 261 SMART ringv_2 58 105 IPR011016 GO:0008270
Mepo4g04628 261 SUPERFAMILY RING/U-box 58 109 - -
Mepo4g04628 261 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 236 IPR033275 -
Mepo4g04628 261 CDD RING_CH-C4HC3_MARCH 59 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04628 Mepo-Chr4 55805687 55809100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04628 23 158 C3H Transcription Factor Family AT5G63780 26.797 2.14e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04628 4 55805687 55809100 Mepo4g04628 4 55805687 55809100 ECH