Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04622 ATGGGGACGAAGGCAAAGAAAGCCATGAAGAAGAAGAGTTTGAAAAGGGTCAATGCTATCAATAATAAACCATCCGAGCATGCTGCTGATTTTTTGCCGTTGGAAGGTGGTCCTGGTCGCAAACTTCCTGAACTTAAACCATTGGAGAATTCTTCCCCTGTTTTGTATATTGGTCGGATTCCACATGGCTTCTATGAGAAGGAGATGGAAGCTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTTCCAGAAATAAAAAGACCGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCCGAGGTAGCAAAAATTGTTGCTGATACTATGCACAATTATTTGCTTTTTGAACACCTACTACAGGTTTTTGTGGTACCTTCAGAACATGTTCATCCTAGAATATGGAAAGGATTCAATTACCGCTACAAGCCCTTGGACACTCTTCAAATTGAACGAGAGCGACATGACAAGGAAAGAACATTGGAAGAACAAAAAAAGTTGGTTGATAGAGTTATGAAACGTGACAAAAAGCGACGCAAAAAGATAGAGGCTGCTGGCATTGATTATGAATGTCCCGATATTGTGGGTAACCTCCAGTCTGCTCCAAAGAAGATAAAGTTCGAAGACTGA 642 0.3988 MGTKAKKAMKKKSLKRVNAINNKPSEHAADFLPLEGGPGRKLPELKPLENSSPVLYIGRIPHGFYEKEMEAYFGQFGTIKRLRISRNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPSEHVHPRIWKGFNYRYKPLDTLQIERERHDKERTLEEQKKLVDRVMKRDKKRRKKIEAAGIDYECPDIVGNLQSAPKKIKFED 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04622 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Mepo4g04622 213 Coils Coil 149 169 - -
Mepo4g04622 213 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 212 - -
Mepo4g04622 213 SMART rrm1_1 54 127 IPR000504 GO:0003723
Mepo4g04622 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 122 IPR000504 GO:0003723
Mepo4g04622 213 CDD RRM_NIFK_like 54 126 - -
Mepo4g04622 213 SUPERFAMILY RNA-binding domain, RBD 34 140 IPR035979 GO:0003676
Mepo4g04622 213 Gene3D - 3 127 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04622 Mepo-Chr4 55750534 55753994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04622 55 126 Eukaryotic Initiation Factors Gene Family AT1G71770 31.944 1.13e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04622 K14838 - gmx:100814276 324.709