Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04607 ATGGCTATCCATCATCATCACCAACAACACACTTCTTCTCTTTTTGATGCTCTTTACTGTGATGAAGAAGAAAAATGGGAAGACGATGATGAAGGAGAAGTTGTGGATGGAGAACAAAGTGATGTGACAATAAACAATGATATATTGGACTCTACTTCCCTTTTACCTCTGCTTTTGTTAGAACAAAACTTGTTCAATGAAGATGAAGAACTCAACACTCTTTTCTCTAAAGAAAAGATTCAACAAGAAACTTATTATGAGGATCTGAAAAATGTGATGAACATTGACTTACTCTCTCAACCTCGTCGTGAAGCTGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGTTTCTCTGCTCTCACCGCAACACTTGCTGTTAACTATCTTGATAGGTTCCTTCTAAGCTTCCATTTTCAAATGGAAAAGTCATGGATGATTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTAGACCTTCAAGTGCAAGATACTAAATATGTGTTTGAGGCAAAGACTATTCAGAAAATGGAGCTTTTGATTCTGTCAACACTGAAATGGAAGATGCATCCAGTGACAACATACTCTTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACTAATCTTCATTGGGAGTTTCTTAGGCGCTGTGAGAATCTTCTTCTATCTGTACTTTTAGATTCAAGATTTGTTGGTTGTGTTCCTTCTGTGCTGGCCACTGCTACAATGTTGCATGTTATAGACCAAATTGAACAGAGTGATGATAATGGTGTGGATTACAGAAATCAGCTTCTTAATGTTCTCAAAATCAGCAAGGAGAAAGTTGATGAATGTTATAATGCGATTCTTCATCTTACAAATGCAAATAATTATGGTCATAATAAACGAAAGTATGAAGAAATCCCCGGTAGTCCAAGTGGCGTAATTGATGCTGTTTTTAGTTCTGATGGTTCTAACGATTCGTGGACAGTGGGAGCATCATCATATTCAACCTCAGAGCCTGTGTTTAAGAAGACCAAAAACCAAGGACAAAATATGAATTTGTCACCGATTAACAGGGTCATTGTCGGAATTCTTGCCACTGCAACCTCTCCTTAA 1140 0.3728 MAIHHHHQQHTSSLFDALYCDEEEKWEDDDEGEVVDGEQSDVTINNDILDSTSLLPLLLLEQNLFNEDEELNTLFSKEKIQQETYYEDLKNVMNIDLLSQPRREAVEWMLKVNAHYGFSALTATLAVNYLDRFLLSFHFQMEKSWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQKMELLILSTLKWKMHPVTTYSFLDHIIRRLGLKTNLHWEFLRRCENLLLSVLLDSRFVGCVPSVLATATMLHVIDQIEQSDDNGVDYRNQLLNVLKISKEKVDECYNAILHLTNANNYGHNKRKYEEIPGSPSGVIDAVFSSDGSNDSWTVGASSYSTSEPVFKKTKNQGQNMNLSPINRVIVGILATATSP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04607 379 SMART cyclin_7 107 195 IPR013763 -
Mepo4g04607 379 SMART Cyclin_C_2 204 321 IPR004367 -
Mepo4g04607 379 FunFam D3-type cyclin 95 202 - -
Mepo4g04607 379 SUPERFAMILY Cyclin-like 67 202 IPR036915 -
Mepo4g04607 379 FunFam CYCLIN D32 203 294 - -
Mepo4g04607 379 PANTHER CYCLINS 71 302 IPR039361 -
Mepo4g04607 379 Pfam Cyclin, C-terminal domain 204 312 IPR004367 -
Mepo4g04607 379 Gene3D - 203 296 - -
Mepo4g04607 379 Pfam Cyclin, N-terminal domain 87 201 IPR006671 -
Mepo4g04607 379 CDD CYCLIN_AtCycD-like_rpt2 204 296 - -
Mepo4g04607 379 Gene3D - 89 202 - -
Mepo4g04607 379 ProSitePatterns Cyclins signature. 102 133 IPR006671 -
Mepo4g04607 379 CDD CYCLIN_AtCycD-like_rpt1 102 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04607 Mepo-Chr4 55645255 55647602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04607 1 299 Core Cell Cycle Gene Families AT4G34160 56.436 2.33e-106 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04607 K14505 - gmx:547740 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04607 4 55645255 55647602 Mepo4g04607 4 55645255 55647602 ECH
Mepo3g07163 3 85310130 85312080 Mepo4g04607 4 55645255 55647602 ECH