Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04552 ATGATTTTTTCAACTGGAAAGTCAACAAGTCCTAGCGATTTTACAACTGAGAAGATAGGAACTGAACAACGTGACATGTCTGAAAAAACAGCTCAGATCGGCTCTGAATGTTTAGACAAAGAACAAAGTGTGCTTGGTACTGTGGTAACCGATTTTGCTATCGATGAAAAATCAAATCATGTTTCGGTGAATATGACCGAGAATTCTGTTATTCAACTGCCTGGAGAGATGAGAGATGCAGTAACTACCCTTGTTGAAGAACAACCACAACCTGTTCCTGTTCAAGTGAAATCAAATTCTGTGAATGAGCTATTGGATCCACCTTCTGGAGATGTTGCGAAAAATATTAGTTCTCAAAACGAACCTGGTGAAACGAGTGATGCAGTTACTGGCCTTGTTGAAGACCAAAAACAATCTGTTCCTGCTCAAGTGAAAACAGAATCTTCTGGAGATGCTGCGAAAAGTAATAGTTCTGATTGTTCAGAAAGAAAGTCTAAAAACTTGGGTCAAATGCGAGTGAAACATGGGGCAAAAAAAAACTCAAAATTATCGAAGAAGTATGTATTAAGGTCGTTAGGAAGCAGCGACAGAGCTCTGCGGTCGAGGACAAAAGACGATAAACCTAAAGATCCTGAACCGATTAATACTGTTACTGGTGTTAATAATGATGAAATGAAGACAAAAGAAAGGAGGAAGAAGAAGAAGAAGAAAAAGACAAGAAAAGAGGGAATTAATGATCAATTTTCTAAAATCAGAGCTCAACTGAGATATTACTTGAACCGAATAAGCTACGAGCAAAACTTGATTGACGCTTATTCTGGTGAGGGCTGGAAAGGATCCAGCATGGAAAAATTAAAGCCAGAGAAGGAGATTCAACGGGCCAAGTCCGAAATTCTGCGACGCAAATTAAAAATCAGGGATCTATTTCAAAATTTGGATTTGTTGTGTGCTGAAGGAAGGCTTCCTGAATCTTTGTTTGATTCTGAGGGAGAGATTGATAGTGAGGATATATTCTGTGCAAAATGCCAGACCAAAGTGTTGGGTACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGGTATCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGTAAAGATGACTGCATCGAACTTGTTAACGACTTGTTAGGGACAAGTCTCTCTCTTACTGATTCCTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATCACAACCTGGGACTTCCTTCAGATGATTCTGACGATGATGATTATAATCCTGATGGTCCAGAGGATGTGAAGGTTGAAGGAGGCAAATCAAGTTCTGACGAATCTGAGTATGCATCTGCTCCTGAGAAATTCGAGGATCCAGGCCATGGGGATCAATACATGGGTCTTCCTTCTGAAGATTCAGAGGATGATGATTTTGATCCCGATGCTCCCAATCCTGGTGCTAAAGACACTGAAGAAAGTTCAAGTTCCGATTTCACATCTGATTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCCACCGGACAAGATGATGTCACATCTGCACCGTTGGATGATGTTAAGAACTTCAAAGGTTCTAGTAAACAAAACCGTAAGAAGCCATCTATAACCGATGAACTGTCATCTTTAGCAGAGCCAGATCTCGGTGAAGAGGATTTGACTCCGGTTTCTGGGAAAAGAAATGTTGAAAGGCTGGACTACCAAAAGCTGTATGAAGAGACATACCATAGTGATACTAGTGATGATGAAGATTGGGCCGACACTGCTACTCCAAGTAGAAAAAAGAAACTCACCACCAAAATAATTCCAGGGTCACCAAATGGAAATGCCTCAAATAATTCCCGCCGTACTGCCAAGAGGAACACCCATCAGCATAAAGTTGAAAATACAAATAATTCACCCACCAAAACACTTGAAGGATGCACGGAATCGGGTAAAAAACGTGGATCTTCATACAATAAACTTGGAGAAGCTGTTGTTCAGAGACTTCATAAATCTTTCAATGAAAATCAATATCCAGAACGAACCGCAAAAGAAAGCTTGGCGCAAGAACTGGGACTCACTTTTCAACAGGTTGACAAATGGTTTGGCAATTCTCGTTGGAGGTTCCGACATTCATCATGTAAGGAGGCCAGTCCAGGTAGTAATGCTTCACAGCAGGCCAATGACAGTGGAGCTGAAAATAAAGGAGATAATGCTTCGCAGCAGGCCAGTGAAAGCGGAGCTGAAAATAAAGGAGATAGGGGTAATGCTTCGCAGCAAGCCACTGACAGCAGAGGTGAAAACAAAGGAGAGACGGAGCATCAACTAGTTTCCCAGGAGACTAGTGGAGAAAAATCGAAAACCCCAAGCTCGAAGAAAAGGAAGCGTTTGTCTGAGCCGCAGACATCTGAAGCAGGGCTGGTCCATAACGGCTCAACCTTTGATTGCTTACCGGTAGCTGGCACAAGCAATAAATTGAAGAAAAAGAAGGGGAAATGA 2559 0.4193 MIFSTGKSTSPSDFTTEKIGTEQRDMSEKTAQIGSECLDKEQSVLGTVVTDFAIDEKSNHVSVNMTENSVIQLPGEMRDAVTTLVEEQPQPVPVQVKSNSVNELLDPPSGDVAKNISSQNEPGETSDAVTGLVEDQKQSVPAQVKTESSGDAAKSNSSDCSERKSKNLGQMRVKHGAKKNSKLSKKYVLRSLGSSDRALRSRTKDDKPKDPEPINTVTGVNNDEMKTKERRKKKKKKKTRKEGINDQFSKIRAQLRYYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDLLCAEGRLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIELVNDLLGTSLSLTDSWERVFPEAATAAGSILDHNLGLPSDDSDDDDYNPDGPEDVKVEGGKSSSDESEYASAPEKFEDPGHGDQYMGLPSEDSEDDDFDPDAPNPGAKDTEESSSSDFTSDSEDLAATIKDNMSTGQDDVTSAPLDDVKNFKGSSKQNRKKPSITDELSSLAEPDLGEEDLTPVSGKRNVERLDYQKLYEETYHSDTSDDEDWADTATPSRKKKLTTKIIPGSPNGNASNNSRRTAKRNTHQHKVENTNNSPTKTLEGCTESGKKRGSSYNKLGEAVVQRLHKSFNENQYPERTAKESLAQELGLTFQQVDKWFGNSRWRFRHSSCKEASPGSNASQQANDSGAENKGDNASQQASESGAENKGDRGNASQQATDSRGENKGETEHQLVSQETSGEKSKTPSSKKRKRLSEPQTSEAGLVHNGSTFDCLPVAGTSNKLKKKKGK 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04552 852 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 126 818 - -
Mepo4g04552 852 ProSiteProfiles 'Homeobox' domain profile. 672 732 IPR001356 GO:0003677
Mepo4g04552 852 MobiDBLite consensus disorder prediction 97 244 - -
Mepo4g04552 852 CDD homeodomain 686 733 IPR001356 GO:0003677
Mepo4g04552 852 ProSiteProfiles Zinc finger PHD-type profile. 336 393 IPR019787 -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 786 800 - -
Mepo4g04552 852 Gene3D - 675 744 - -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 112 156 - -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 170 185 - -
Mepo4g04552 852 SMART PHD_3 338 391 IPR001965 -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 197 212 - -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 578 620 - -
Mepo4g04552 852 FunFam Homeobox protein HAT3.1 319 398 - -
Mepo4g04552 852 CDD PHD_PRHA_like 338 390 IPR045876 -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 1 17 - -
Mepo4g04552 852 Coils Coil 222 242 - -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 653 675 - -
Mepo4g04552 852 Pfam Homeodomain 685 731 IPR001356 GO:0003677
Mepo4g04552 852 MobiDBLite consensus disorder prediction 506 539 - -
Mepo4g04552 852 SUPERFAMILY FYVE/PHD zinc finger 328 396 IPR011011 -
Mepo4g04552 852 ProSitePatterns Zinc finger PHD-type signature. 339 390 IPR019786 -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 429 679 - -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 450 479 - -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 1 31 - -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 628 643 - -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 732 852 - -
Mepo4g04552 852 SUPERFAMILY Homeodomain-like 681 740 IPR009057 -
Mepo4g04552 852 SMART HOX_1 670 736 IPR001356 GO:0003677
Mepo4g04552 852 Pfam PHD-finger 338 393 IPR019787 -
Mepo4g04552 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 401 IPR013083 -
Mepo4g04552 852 MobiDBLite consensus disorder prediction 735 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04552 Mepo-Chr4 55229589 55237033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04552 234 727 Homeobox Transcription Factor Family AT3G19510 47.448 3.69e-126 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Mepo4g04552 PHD 3.8e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04552 - - mtr:25485369 1543.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04552 4 55229589 55237033 Mepo4g04552 4 55229589 55237033 ECH